Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00241
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4DNJ1 Cluster: Putative uncharacterized protein; n=2; ...    38   0.32 
UniRef50_Q8G4F7 Cluster: DNA gyrase subunit B; n=4; Bifidobacter...    35   1.7  
UniRef50_Q7ND80 Cluster: WD-repeat protein; n=5; Cyanobacteria|R...    34   3.9  
UniRef50_Q2GWG6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q7NLE9 Cluster: WD-repeat protein; n=1; Gloeobacter vio...    33   6.8  
UniRef50_Q07955 Cluster: Splicing factor, arginine/serine-rich 1...    33   6.8  
UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n...    33   9.0  
UniRef50_Q6AJM6 Cluster: Related to HemK methylase; n=1; Desulfo...    33   9.0  
UniRef50_Q4MZ28 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  
UniRef50_Q55R31 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_Q4DNJ1 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 790

 Score = 37.5 bits (83), Expect = 0.32
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
 Frame = -3

Query: 340 PDNSQSSDTSGSAADPVR--DTCWCM-YEAYSVAHIQDMVSQIPPSSIR*YSTQDDSRLF 170
           PD+ QS+DT        R  DT     +++   AH QD++S  PPSS    + ++ S L 
Sbjct: 180 PDSKQSADTQNHLLPQNRHYDTGNSKAFQSQIQAHKQDVISLSPPSSAG--TRRNSSVLL 237

Query: 169 SGRQRLRKTQLRINATPLVTQSRFSQVRCAELSLHQCQIKYE 44
             R   R+    +   P+++QS   + R  E+ + +  +K E
Sbjct: 238 HDRHDNRRNTATLADVPIISQSCTPESRYMEIVIEKIAVKNE 279


>UniRef50_Q8G4F7 Cluster: DNA gyrase subunit B; n=4;
           Bifidobacterium|Rep: DNA gyrase subunit B -
           Bifidobacterium longum
          Length = 772

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +1

Query: 250 LRNRPRTYTNTCPGQGLLHCLMYQMIENCPEESL 351
           +R RP  Y  T   QGL+HCL +++I+N  +E+L
Sbjct: 20  VRKRPGMYIGTTDSQGLMHCL-WEIIDNSVDEAL 52


>UniRef50_Q7ND80 Cluster: WD-repeat protein; n=5; Cyanobacteria|Rep:
            WD-repeat protein - Gloeobacter violaceus
          Length = 1188

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 339  RTILNHLIHQAVQQTLSGTRVGVCTRPIP*HTSRIWSVRFRQAPSGNILLKTTADCSLGG 160
            RT+++    Q V+  L     G C R +  HTS++WSV F  +P G  ++  + D ++  
Sbjct: 1086 RTVVSSSHDQTVR--LWDAATGECLRTLTGHTSQVWSVAF--SPDGRTVISGSQDETIRL 1141

Query: 159  RDS--GKP 142
             DS  GKP
Sbjct: 1142 WDSHTGKP 1149


>UniRef50_Q2GWG6 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 470

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 335 VRKKVCVKMTSVHPCRHFLDSITCSHKVCTKIWRSIYLLKF 457
           V  + CV  T +HP      S +C H+ C    RS++   F
Sbjct: 190 VVSRTCVACTEIHPVTRLAKSPSCGHEYCQDCLRSLFTSSF 230


>UniRef50_Q7NLE9 Cluster: WD-repeat protein; n=1; Gloeobacter
           violaceus|Rep: WD-repeat protein - Gloeobacter violaceus
          Length = 1183

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = -1

Query: 285 TRVGVCTRPIP*HTSRIWSVRFRQAPSGNILLKTTAD 175
           T  G CTR +  HT  IWSV F  AP G  L   +AD
Sbjct: 887 TEDGRCTRVLSGHTHPIWSVAF--APGGATLASASAD 921


>UniRef50_Q07955 Cluster: Splicing factor, arginine/serine-rich 1;
           n=43; Deuterostomia|Rep: Splicing factor,
           arginine/serine-rich 1 - Homo sapiens (Human)
          Length = 248

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: TPR Domain containing
            protein - Tetrahymena thermophila SB210
          Length = 3418

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = -2

Query: 398  LNPESDDTGEQTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYVRGLFRSTHPGYGQSDS 219
            +NP +D+     S L R+   + S + Y++QC    P H L   R      +       +
Sbjct: 1278 INPTNDECQYYLSDLMRIIGKKDSQVHYLKQCLTLNPTHELALQR-----KYELQNSCQN 1332

Query: 218  AKLHQVIFYSRRQQTVLWE-AETPEN 144
             +L Q IFY    Q   WE  E  EN
Sbjct: 1333 EQLAQTIFYEELDQHNNWEYVEQEEN 1358


>UniRef50_Q6AJM6 Cluster: Related to HemK methylase; n=1;
           Desulfotalea psychrophila|Rep: Related to HemK methylase
           - Desulfotalea psychrophila
          Length = 291

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 158 LPPREQSAVVLSRILPD-GAWRNLTDHILDVCYGIGLV 268
           L PR ++  +L ++L   GAWR     +LD+C G G++
Sbjct: 91  LIPRPETEFMLEKVLASAGAWRESVTPVLDLCTGSGVI 128


>UniRef50_Q4MZ28 Cluster: Putative uncharacterized protein; n=1;
           Theileria parva|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 1571

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 373 PVSSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRNYFKSKCCQVHL 513
           P+S    F Y      Y++L+E+ PVE   E++L+   K K   VH+
Sbjct: 845 PLSVTEEFYYFNEDLRYKNLQENQPVEYYHEFYLKLTDKEKILSVHM 891


>UniRef50_Q55R31 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 310

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
 Frame = +2

Query: 29  LLWLFFIFNLALVQAEFGTPYLRKSRLCHQWSCINTKLGFPESLPPREQSAVVLSRILPD 208
           +L+ FFI  +  + A   +P  R +R    W  + + L   +        +  L+R+ PD
Sbjct: 217 ILFAFFIPEVGDIAASSISPSRRAARKVKHWLKLRSLLSRDQQYEDGSWQSRGLARVFPD 276

Query: 209 G-------AWRNLTDHILDVCYGIGLVH 271
                    WR  TDH     YG GLVH
Sbjct: 277 PNTGGDLYEWR-YTDHFRKQLYGEGLVH 303


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,705,035
Number of Sequences: 1657284
Number of extensions: 16065467
Number of successful extensions: 37521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37517
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)