Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00241
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 28 1.5
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 27 2.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 2.6
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 4.6
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 6.0
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 26 6.0
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa... 25 8.0
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 8.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 25 8.0
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 25 8.0
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 8.0
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 598 FSCAYRGPCV*IWSIDEKPHSSNVL 524
F C +GPC+ I+ + E H S+++
Sbjct: 30 FLCCAQGPCLRIYDVSESRHESDLI 54
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +2
Query: 209 GAWRNLTDHILDVCYGIGLVHTPTRVPDRVCCTA*CIR*LRIVRKKVCVKMTSVHPCRHF 388
G+WR ++LD C + + + C A C LR + K CVK S R
Sbjct: 113 GSWRWYDQYMLDCCRSLSDIEKDGVTLEEFSCLANC-NGLRTITK--CVKDVSFDEFRK- 168
Query: 389 LDSITCS 409
D I+CS
Sbjct: 169 -DVISCS 174
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +1
Query: 250 LRNRPRTYTNTCPGQGLLHCLMYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSMYED 429
LRN P +T +H L ++++ N P +S ++C +S L N+ S+
Sbjct: 1149 LRNLPTNLLDTS-----MHKL-FELLPNVPNDSAALGELCDVISKLPPENFALLDSLLHH 1202
Query: 430 LEEHLPVEIRPEWFLRN 480
L + E + +RN
Sbjct: 1203 LRRIIAFEKVNKMNIRN 1219
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 295 GLLHCLMYQMIENCPEESLRKDDVCSPV--SSLSGFNYMFSQSMYEDLEEH 441
G+ HC M E S+ K +V + V SSL F+ S+Y D+++H
Sbjct: 785 GITHCSMND--EGYTTISIPKANVLNSVYNSSLKNFSSSNDTSVYHDVQDH 833
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 92 LRKSRLCHQWSCINTKLGFPESLPPREQSAVVLSRILPDGAWRNLTDHILDVCYGI-GLV 268
L K R+ +Q+ + G + +A+ LS+ D W+ L+ + VC I +
Sbjct: 244 LSKGRIENQFGQLYLLAGRVPNALKHFSTAIALSKATGDFLWQGLSLELFTVCLVIMAHL 303
Query: 269 HTPTRVPDRV 298
H ++P +
Sbjct: 304 HVDVQIPPNI 313
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 435 GAFTC*NSS*MVFEKLFQIEVLSGAPLVNMSTLLECGFSSILQIYT 572
G TC + + KL+Q + SG+P+ ++S L F + +YT
Sbjct: 83 GICTCFKTLNQLHTKLYQQMISSGSPVYSLSQSLP-AFRDVYHMYT 127
>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 50 FNLALVQAEFGTPYLRKSRLCHQWSCINTKLGFP-----ESLPPREQSAVVLSRILPDGA 214
+NLA++ FG P++ + +S I+T L E PP E + + I+ D
Sbjct: 250 YNLAILAKHFGKPFI----VAAPFSSIDTSLASGSQITIEQRPPIEMTTIT-GPIITDSN 304
Query: 215 WRNLTD 232
RNL D
Sbjct: 305 SRNLED 310
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 268 TYTNTCPGQGLLHCLMYQMIEN 333
TYT PGQ L ++YQ I +
Sbjct: 206 TYTRRGPGQAYLRSILYQCIND 227
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 256 SVAHIQDMVSQIPPSSIR*YSTQDDSRLFSGRQRLRKTQLRINATPLVTQSRFSQ 92
SV+H+ D+V P + Y+ + R SGR L + R N P+V +R Q
Sbjct: 161 SVSHVADVVG--PEGLV--YAVEFSHR--SGRDLLNMAKKRTNVIPIVEDARHVQ 209
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 513 LVNMSTLLECGFSSILQIYTHGPRYAHEKQLHKL 614
++ + ++L G+S ++ I+T + K LHKL
Sbjct: 566 ILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKL 599
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 86 PYLRKSRLCHQWSCINTKLGFPESLPPR 169
P R S +C +NTK F E LPPR
Sbjct: 2 PLGRSSWICCAKYFVNTKSRFNEILPPR 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,951
Number of Sequences: 5004
Number of extensions: 69625
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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