Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00241
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    29   3.6  
11_06_0754 - 26935647-26937780,26940890-26941827                       28   6.3  
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981...    28   6.3  
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340...    28   8.3  
03_04_0137 - 17617385-17617642,17617850-17618007,17618964-17619000     28   8.3  

>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 355 KDDVCSPVSSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRNYFKSKCCQVH 510
           KD VC      S FN +  +S ++D+EE L  +   E+ L  +   K C++H
Sbjct: 450 KDGVCLEKIGHSIFNELARRSFFQDVEETLMSKYSLEYNLCRF--RKMCKIH 499


>11_06_0754 - 26935647-26937780,26940890-26941827
          Length = 1023

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 83  TPYLRKSRLCHQWSCINTKLGFPESLPPREQSAVVLSRILPDGAWRNLTDHI 238
           T  L KSR   QW  +N  LG+     P  +    + ++L D ++ NL++H+
Sbjct: 416 TSILEKSRKMEQWGYVNKSLGYNLMKNPTLEG---IKQVL-DLSYNNLSEHL 463


>07_03_1570 +
           27797315-27797409,27797519-27797551,27798135-27798199,
           27798406-27798493,27798579-27798651,27798975-27799081,
           27799595-27799637,27799760-27799816,27799905-27799981,
           27800221-27800266,27800364-27800410,27800498-27800571,
           27800656-27800711,27800885-27801011,27801133-27801206
          Length = 353

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 249 HTSRIWSVRFRQAPSGNILLKTTADCSLGGRD--SGKPNFVLMQLH 118
           H     +VRF +  SGN++L  +ADCS+   D  +GKP   L   H
Sbjct: 50  HKESCRAVRFVE--SGNVILTGSADCSILASDVETGKPIARLEDAH 93


>12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,
            3404071-3404562,3404718-3404821,3404913-3404994,
            3405085-3405441,3405532-3406089,3406376-3406479,
            3406575-3406650,3406764-3406898,3407192-3407494,
            3407581-3408345,3409459-3412591,3412763-3412882
          Length = 2445

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 340  EESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEH---LPVEIRPE 465
            E+S + DD+C  +S++ G + + S    ED  EH   L +EI  E
Sbjct: 1097 EKSNQGDDLCKNLSTVKGESPLASNFHVEDAAEHGSMLQIEINAE 1141


>03_04_0137 - 17617385-17617642,17617850-17618007,17618964-17619000
          Length = 150

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +2

Query: 119 WSCINTKLGFPESLPPREQSAVVLSRILPDGAWRNLTDHILD--VCYGIGLVHTPTRVPD 292
           +  I   L FP S PP   S + +++ +      NLT H +D  V   I L+   T   D
Sbjct: 64  YKTIGPLLPFPPSYPPLCSSKISMAQTMSALVCNNLTTHAIDENVLMFIALLAHLTIAYD 123

Query: 293 RVCCTA*CIR*LR 331
               T  CI  LR
Sbjct: 124 IHAKTVECIHALR 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,576,973
Number of Sequences: 37544
Number of extensions: 459254
Number of successful extensions: 1088
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)