Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00241
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)         29   2.8  
SB_44233| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_29931| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)                      28   8.5  

>SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)
          Length = 1074

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 250  LRNRPRTYTNTCPGQGLL---HCLMYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSM 420
            L +RP TY     G+  L   H +  + + + P+E +  DDV +P  + S F Y +S+  
Sbjct: 889  LNDRPLTYVYDEVGEVELTPAHLMYGRRLNSFPDEVVEPDDVANPDHN-SRFRYRWSKEY 947

Query: 421  YEDLEE 438
               L E
Sbjct: 948  LASLRE 953


>SB_44233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -3

Query: 454 FQQVNAPPNLRTYFVRTCN*IQKVTTRVNRRHLYADFLPDNSQSSDTSGSAADPVRDTCW 275
           +Q +  P ++  YF  TC    K  ++ N  + +  + PD   S+  SGSA +      W
Sbjct: 316 WQTLRQPLHIDPYFA-TCPFNAKQGSQYNENN-FGSYCPDGQMSTGFSGSATEESTTQWW 373

Query: 274 CMYEAY 257
               AY
Sbjct: 374 FGGNAY 379


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 179 AVVLSRILPDGAWRNLTDHILDVCYG 256
           A V +   P G + N+T+ I D+CYG
Sbjct: 503 ACVTADQCPAGTYANVTERICDLCYG 528


>SB_29931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = +2

Query: 47  IFNLALVQAEFGTPYLRKSRLCHQ------WSCINTKLGFPESLPPREQSAVVLSRILPD 208
           + NL L+  +F T    ++ L HQ      W  +        S+P RE    + + I P 
Sbjct: 70  LLNLGLLSTDFPTNPHTRAALIHQRVPKDTWKTVTDAWNGYHSVPLREADRHLTTFITPF 129

Query: 209 GAWR 220
           G WR
Sbjct: 130 GRWR 133


>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 589

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 244 CVLRNRPRTYTNTCPGQGLLHCLMYQMIENCPEESLRKDDV 366
           C+ +N  +T  +     G+   ++  ++E+CPEE L  + V
Sbjct: 453 CLKKNNGKTAEDIAAEMGIDKDVIVPLLEDCPEEGLNPNQV 493


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,213,772
Number of Sequences: 59808
Number of extensions: 551703
Number of successful extensions: 1375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)