Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00241
         (705 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M72709-2|AAA35565.1|  248|Homo sapiens protein ( Human alternati...    33   0.99 
M72709-1|AAA35564.1|  292|Homo sapiens protein ( Human alternati...    33   0.99 
M69040-1|AAA03476.1|  248|Homo sapiens SF2p33 protein.                 33   0.99 
BC033785-1|AAH33785.1|  201|Homo sapiens SFRS1 protein protein.        33   0.99 
BC010264-1|AAH10264.1|  248|Homo sapiens splicing factor, argini...    33   0.99 
AB209558-1|BAD92795.1|  233|Homo sapiens splicing factor, argini...    33   0.99 
AB062124-1|BAB93456.1|  248|Homo sapiens OK/SW-cl.3 protein.           33   0.99 
U87279-1|AAD00626.1|  221|Homo sapiens splicing factor SRp30c pr...    30   7.0  
U30825-1|AAA93069.1|  221|Homo sapiens SRp30c protein.                 30   7.0  
BC093973-1|AAH93973.1|  221|Homo sapiens splicing factor, argini...    30   7.0  
BC093971-1|AAH93971.1|  221|Homo sapiens splicing factor, argini...    30   7.0  
AL021546-5|CAA16498.1|  221|Homo sapiens splicing factor, argini...    30   7.0  

>M72709-2|AAA35565.1|  248|Homo sapiens protein ( Human alternative
           splicing factor mRNA, complete cds. ).
          Length = 248

 Score = 33.1 bits (72), Expect = 0.99
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>M72709-1|AAA35564.1|  292|Homo sapiens protein ( Human alternative
           splicing factor mRNA, complete cds. ).
          Length = 292

 Score = 33.1 bits (72), Expect = 0.99
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>M69040-1|AAA03476.1|  248|Homo sapiens SF2p33 protein.
          Length = 248

 Score = 33.1 bits (72), Expect = 0.99
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>BC033785-1|AAH33785.1|  201|Homo sapiens SFRS1 protein protein.
          Length = 201

 Score = 33.1 bits (72), Expect = 0.99
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>BC010264-1|AAH10264.1|  248|Homo sapiens splicing factor,
           arginine/serine-rich 1 (splicing factor 2, alternate
           splicing  protein.
          Length = 248

 Score = 33.1 bits (72), Expect = 0.99
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>AB209558-1|BAD92795.1|  233|Homo sapiens splicing factor,
           arginine/serine-rich 1 (splicing factor 2, alternate
           splicing  protein.
          Length = 233

 Score = 33.1 bits (72), Expect = 0.99
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 146 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 181


>AB062124-1|BAB93456.1|  248|Homo sapiens OK/SW-cl.3 protein.
          Length = 248

 Score = 33.1 bits (72), Expect = 0.99
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  R ++ VV+S + P G+W++L DH+    DVCY
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149


>U87279-1|AAD00626.1|  221|Homo sapiens splicing factor SRp30c
           protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  +S   V++S + P G+W++L DH+    DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139


>U30825-1|AAA93069.1|  221|Homo sapiens SRp30c protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  +S   V++S + P G+W++L DH+    DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139


>BC093973-1|AAH93973.1|  221|Homo sapiens splicing factor,
           arginine/serine-rich 9 protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  +S   V++S + P G+W++L DH+    DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139


>BC093971-1|AAH93971.1|  221|Homo sapiens splicing factor,
           arginine/serine-rich 9 protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  +S   V++S + P G+W++L DH+    DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139


>AL021546-5|CAA16498.1|  221|Homo sapiens splicing factor,
           arginine/serine-rich 9 protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 161 PPREQS--AVVLSRILPDGAWRNLTDHIL---DVCY 253
           PP  +S   V++S + P G+W++L DH+    DVCY
Sbjct: 104 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCY 139


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,555,633
Number of Sequences: 237096
Number of extensions: 2563222
Number of successful extensions: 5327
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5327
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)