Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00241
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical p...    28   5.7  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    28   5.7  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z79603-7|CAB01896.1|  259|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...    27   9.9  
AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    27   9.9  
AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical...    27   9.9  
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.        27   9.9  
AF125442-7|AAD12796.1|  203|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK380.2 protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/72 (27%), Positives = 39/72 (54%)
 Frame = +1

Query: 307 CLMYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRNYF 486
           C+ +Q  E+  +  L      S V SL+   YMFS++ YE L+    ++++P   L +Y+
Sbjct: 382 CINHQFSEHIEKLKLEHK---SYVESLNDLKYMFSEAQYELLDS---LDVKPR-ALCDYY 434

Query: 487 KSKCCQVHL*ST 522
           +++   +H  S+
Sbjct: 435 RARFDLIHFYSS 446


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 331  SQSSDTSGSAADPVRDTCWCMY 266
            S SS  S  +A+P R+TC+ MY
Sbjct: 1089 SISSSQSSQSAEPARETCYVMY 1110


>Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +1

Query: 298 LLHCLMYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEHLPVE 453
           ++  + Y++     EE +   +    + +L GF+     + Y +L +H+P+E
Sbjct: 350 IVRFITYRICAGAEEERVTMSEAVRELLTLEGFDQAPGSNSYFELPDHIPME 401


>Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +1

Query: 298 LLHCLMYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEHLPVE 453
           ++  + Y++     EE +   +    + +L GF+     + Y +L +H+P+E
Sbjct: 350 IVRFITYRICAGAEEERVTMSEAVRELLTLEGFDQAPGSNSYFELPDHIPME 401


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 331  SQSSDTSGSAADPVRDTCWCMY 266
            S SS  S  +A+P R+TC+ MY
Sbjct: 1089 SISSSQSSQSAEPARETCYVMY 1110


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 343 LPDNSQSSDTSGSAADPVRD 284
           LP +SQ+  TSGSAA PV D
Sbjct: 823 LPTSSQTPPTSGSAAPPVDD 842


>AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical
           protein C27A12.8 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 389 LDSITCSHKVCTKIWRSIYLLKFVLN 466
           L  ++C+H+ CT+ W++ YL   + N
Sbjct: 137 LSGLSCNHRACTQCWKA-YLTNKIAN 161


>Z79603-7|CAB01896.1|  259|Caenorhabditis elegans Hypothetical
           protein M163.7 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +1

Query: 361 DVCSPVSSLSGFNYMF--SQSMYED--LEEHLPVEIRPEWFL 474
           D C P   + GF Y F  S+++  +  L EH  +++   W+L
Sbjct: 81  DFCLPEDEMGGFQYFFLHSETVVSNSKLTEHSRIKVELSWWL 122


>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +2

Query: 182 VVLSRILPDGAWRNLTDHIL---DVCY 253
           V++  + P G+W++L DH+    DVCY
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRDAGDVCY 151


>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 561 QIYTHGPRYAHEKQLHKLPVAVAQRQLLNRIP*TLYVCRKYK 686
           Q +   P+YA  KQL + PVA A   L  R P   Y+  +++
Sbjct: 728 QNFHENPQYATFKQLLEAPVADATSILQERFPMPRYIVTEHE 769


>AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical
           protein Y54G11A.15 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 3   RMFFSKTWVCSGYFSYLIWHWCKLSSAHLT*ENLDCVTNGVALIRSWVFRSLCL 164
           R+F    ++     + +IW +C   + HL  +N   +++G   +    F S+C+
Sbjct: 195 RLFNPHMYIACALLTSMIWFYCSHIAWHLLPKNNPSMSSGTRKMLKNFFISMCI 248


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +2

Query: 182 VVLSRILPDGAWRNLTDHIL---DVCY 253
           V++  + P G+W++L DH+    DVCY
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRDAGDVCY 151


>AF125442-7|AAD12796.1|  203|Caenorhabditis elegans Hypothetical
           protein H04M03.11 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 350 CVKMTSVHPCRHFLDSITCSHKVCTKIWRSIYLLKFVLNG 469
           C  + S H C HF   +  +H+   +  +S Y L ++L G
Sbjct: 23  CQTVPSGHACEHFCSVLKTAHENYNR--KSSYFLHYILGG 60


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
           protein ZC132.5 protein.
          Length = 1277

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 249 HTSRIWSVRFRQAPSGNILLKTTADCSLGGRDS 151
           H + IW   F Q PSG +L+KT    +  G+++
Sbjct: 35  HIAEIWRGDFIQLPSGILLIKTVFGYTTMGKNT 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,776,485
Number of Sequences: 27780
Number of extensions: 404943
Number of successful extensions: 1041
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)