Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00241
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05880.1 68414.m00616 expressed protein                             30   1.3  
At5g07220.1 68418.m00823 BAG domain-containing protein contains ...    29   4.0  
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    28   6.9  
At2g41520.2 68415.m05131 DNAJ heat shock N-terminal domain-conta...    28   6.9  
At2g41520.1 68415.m05130 DNAJ heat shock N-terminal domain-conta...    28   6.9  
At5g59270.1 68418.m07427 lectin protein kinase family protein co...    27   9.2  
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    27   9.2  
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica...    27   9.2  
At2g40250.1 68415.m04950 GDSL-motif lipase/hydrolase family prot...    27   9.2  

>At1g05880.1 68414.m00616 expressed protein
          Length = 426

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 371 HPCRHFLDSITCSHKVCTKIWRS 439
           HP ++ L S++C H++CT+ W S
Sbjct: 101 HPHKN-LASVSCGHRICTRCWTS 122


>At5g07220.1 68418.m00823 BAG domain-containing protein contains
           Pfam:PF02179 BAG domain
          Length = 303

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 340 PDNSQSSDTSGSAADPVRDTCWCMYEAYSVAHIQDMVSQIPP 215
           P NS +S +SG+ A  V  + W M+++ S A   + V  +PP
Sbjct: 256 PRNSNASSSSGTPA--VVASKWEMFDSASTAKAAETVKPVPP 295


>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 6   MFFSKTWVCSGYFSYLIWHWCKLSSAH 86
           + FS T++ S YFSYLI H   L S+H
Sbjct: 59  VLFSGTFLLSSYFSYLI-HSLSLLSSH 84


>At2g41520.2 68415.m05131 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 1077

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 33  SGYFSYLIWHWCKLSSAHLT*ENLD 107
           S Y S ++W W K+S +H    NL+
Sbjct: 771 STYHSLIVWRWNKISKSHFYLGNLE 795


>At2g41520.1 68415.m05130 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 1108

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 33  SGYFSYLIWHWCKLSSAHLT*ENLD 107
           S Y S ++W W K+S +H    NL+
Sbjct: 771 STYHSLIVWRWNKISKSHFYLGNLE 795


>At5g59270.1 68418.m07427 lectin protein kinase family protein
           contains Pfam domains PF00139: Legume lectins beta
           domain and PF00069: Protein kinase domain
          Length = 668

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 385 LSGFNYMFSQSMYEDLEEHLPVEIRPE-WFLRNYFKS 492
           L GF Y++ +  Y ++ EH   E  P+ +  RN +K+
Sbjct: 309 LGGFLYLYKKKKYAEVLEHWENEYSPQRYSFRNLYKA 345


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 218 RNLTDHILDVCYGIGLVHTPTRVPD 292
           R  TD ILD+ Y  G++H P  V D
Sbjct: 272 RKNTDSILDISYSNGVLHIPPVVMD 296


>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|O14981
           TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
           sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 2049

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 394 FNYMFSQSMYEDLEEHLPVEIRPEWFLRN 480
           F YM    +YE L   L ++ RPEW +R+
Sbjct: 537 FKYMNPSLIYETLNILLQMQRRPEWEIRH 565


>At2g40250.1 68415.m04950 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 361

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 272 YVRGLFRSTHPGYGQSDSAKL 210
           Y+  LF+S HP YG+S  +KL
Sbjct: 52  YIPTLFQSNHPPYGKSFPSKL 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,597,356
Number of Sequences: 28952
Number of extensions: 368454
Number of successful extensions: 852
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)