Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00240
         (838 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   3.0  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   3.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   3.0  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   9.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   9.1  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 17/67 (25%), Positives = 26/67 (38%)
 Frame = -1

Query: 790 YNPKK*KILHEYKMNIERRNISWFHPDSPPNPYSPRFTVLPVFFTLLTKEPI*CLNGNRF 611
           YNP         K + +R+ +   HPDSP +  S   +  P       KE + C     +
Sbjct: 193 YNPFAKGFRENGKSSAKRKQLVSEHPDSPNSKKSATPSPPPQLEVNERKENLTCQPAVPY 252

Query: 610 LKFCSRC 590
           + F   C
Sbjct: 253 VPFYRYC 259


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 174 SSTLRAPPSAGTSVASTGSPGPMTRRP 254
           SS+L         V S G+PGP+++ P
Sbjct: 76  SSSLSYGGPVNDDVRSPGTPGPLSQAP 102


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 174 SSTLRAPPSAGTSVASTGSPGPMTRRP 254
           SS+L         V S G+PGP+++ P
Sbjct: 232 SSSLSYGGPVNDDVRSPGTPGPLSQAP 258


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 426 YRAWQVDLGR 455
           YR WQ+ LGR
Sbjct: 344 YRHWQIPLGR 353


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 116 PEFKPKTPFGQMPVLEIDGK 175
           P  KP+TPF    +L ++ K
Sbjct: 114 PNRKPRTPFTTQQLLALEKK 133


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,199
Number of Sequences: 336
Number of extensions: 3337
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)