Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00240
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    38   0.002
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   4.4  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    27   4.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   5.8  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   7.6  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 92  NRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGANDEE 250
           +R+     P +   +P G+ P++  DG  Y +S AI  +L RKYG +    EE
Sbjct: 32  DRVDGRAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEE 84


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 195 PSAGTSVASTGSPGPMTRRPRDRPERGVPERH 290
           PS  +SV S  S  P+  R RDR  R    RH
Sbjct: 131 PSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRH 162


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 746 Y*ASKHFLVSSRFTSQSLFTPFYGTPGFFY 657
           Y   ++ L+SS+F SQS F  +  T G FY
Sbjct: 118 YTKDENSLLSSKFLSQSNFKSYNSTHGEFY 147


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +3

Query: 6   TLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASSTL 185
           T+S+  + S  S        +T+   S T++       +S++   S       S+ SS++
Sbjct: 586 TISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHS---SSSRSSSM 642

Query: 186 RAPPSAGTSVA 218
             PPSAG+S +
Sbjct: 643 SLPPSAGSSTS 653


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 27  PSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASSTLRAPPSAG 206
           P RP  R    C     R ++ I  HL      N R +  +C    ST+S+T     SA 
Sbjct: 32  PIRPKGRPISQC--EKCRIAR-ITRHLHVKCTCNSRKKGSKC----STSSTTDLDSSSAS 84

Query: 207 TSVASTGSPGPMTRRPRDRPERGVPERHSRQC 302
            S  S  S       PRD  +   P+R +  C
Sbjct: 85  NSSCSIPSSISEKLLPRDNVKTHCPKRSASCC 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,841
Number of Sequences: 5004
Number of extensions: 55141
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)