Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00240
(838 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 40 0.002
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 38 0.007
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932 36 0.040
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205 36 0.053
01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911 34 0.12
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 34 0.12
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 34 0.16
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 33 0.21
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 33 0.21
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 33 0.37
03_01_0249 - 1935355-1935827,1936129-1936330 32 0.49
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 32 0.65
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 31 1.5
02_04_0470 - 23183925-23184743,23184929-23185153 30 2.6
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836... 30 2.6
07_03_1697 - 28795521-28797328,28797430-28797550 29 3.5
07_03_0142 - 14251959-14252230,14252244-14252316 29 3.5
05_04_0290 + 19883904-19885109 29 4.6
04_04_1367 - 32974757-32975499,32975957-32976179 29 4.6
11_03_0164 + 10972526-10972723,10972818-10973549,10974148-109742... 28 8.0
03_05_0468 - 24630701-24631399 28 8.0
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803... 28 8.0
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 89 DNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGAN 241
D R ++ P F PFGQ+PVL+ + +S AI RY+ KY GA+
Sbjct: 39 DLRTAAHKQPHFLALNPFGQIPVLQDGDEVLYESRAINRYIATKYKAEGAD 89
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 116 PEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKY 223
PE + PFG++PVLE QS AI RY+ RKY
Sbjct: 44 PEHLARNPFGEIPVLEDGDLTLYQSRAIARYIFRKY 79
>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
Length = 219
Score = 35.9 bits (79), Expect = 0.040
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Frame = +2
Query: 26 PVKALGESQ-----RLLLAYG--GQEFE----DNRISSENWPEFKPKTPFGQMPVLEIDG 172
PVK G +Q R+LL G E+E D + PE + PFGQ+P + DG
Sbjct: 3 PVKVFGPAQSTNVARVLLCLEEVGAEYEVVNVDFTVMEHKSPEHLKRNPFGQIPAFQ-DG 61
Query: 173 KQYA-QSTAICRYLGRKY 223
Y +S AI +Y+ RKY
Sbjct: 62 DLYLFESRAIGKYILRKY 79
>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
Length = 220
Score = 35.5 bits (78), Expect = 0.053
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 116 PEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGAN 241
PE + PFGQMP + +S A+ RY+ RKY + AN
Sbjct: 44 PEHLKRNPFGQMPAFQDGDLLLFESRAVGRYILRKYKTSEAN 85
>01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911
Length = 214
Score = 34.3 bits (75), Expect = 0.12
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 8 VKFYYFPVKALGESQRLLLAYGGQEFE----DNRISSENWPEFKPKTPFGQMPVLEIDGK 175
+K Y P+ + L G+++E D I+ PE + PFGQ+P L+
Sbjct: 3 MKVYGLPMSTNVARVLVCLEEAGEQYEVVPIDFSIAEHKSPEHTSRNPFGQVPALQDGDL 62
Query: 176 QYAQSTAICRYLGRK 220
+S AI +Y+ RK
Sbjct: 63 ILFESRAISKYVLRK 77
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 116 PEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKY 223
P+ + PFGQ+P + +S AICRY+ RK+
Sbjct: 44 PDHLARNPFGQVPAFQDGDLMLFESRAICRYILRKH 79
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 107 ENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKY 223
+N PE + PFG++P L+ +S AI +Y+ RKY
Sbjct: 41 QNSPEHVERNPFGKIPALQDGDLVLFESRAIAKYILRKY 79
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 104 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGR 217
S PEF P G++PVLE +S AI RY+ R
Sbjct: 63 SNKTPEFLKMNPLGKIPVLETPEGAVFESNAIARYVAR 100
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 116 PEFKPKTPFGQMPVLEIDGKQYA-QSTAICRYLGRK 220
P+ + PFGQ+P L+ DG + +S AIC+Y+ RK
Sbjct: 44 PDHLARNPFGQVPALQ-DGDLFLWESRAICKYVCRK 78
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 390 ETQ*DTDEEQRSYRAWQVDLGRLCVRRHVRLPEAMLQK 503
E + D D+E SY +W VD R+HV EA+ QK
Sbjct: 1572 EAEIDEDQEPLSYESWDVDFATTAYRQHV---EALAQK 1606
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 32.3 bits (70), Expect = 0.49
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 116 PEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAG 235
P F PFGQ+P + +S AICRY+ +Y +G
Sbjct: 45 PSFLKLQPFGQVPAFKDSLTTVFESRAICRYICDQYADSG 84
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 31.9 bits (69), Expect = 0.65
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 104 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYL 211
S PEF P G++PVLE +S AI RY+
Sbjct: 39 SNKTPEFLKMNPIGKIPVLETPDGPVFESNAIARYV 74
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 104 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYL 211
S PE+ P G++P+LE +S AI RY+
Sbjct: 600 SNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYV 635
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 116 PEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYG 226
P + PFGQ+P E +S AI +Y+ RK+G
Sbjct: 44 PPHISRNPFGQVPAFEDGDLTLFESRAISKYILRKHG 80
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 201 AGTSVASTGSPGPMTRRPRDRPERGVPERHSRQCRIGP 314
AG ++TG P P T P RP P+ R CR P
Sbjct: 242 AGALESATGRPDPGTAVPDPRPPPPPPKARRRPCRRRP 279
>01_01_1060 -
8363272-8365912,8366375-8366443,8366479-8366843,
8367403-8367550,8367630-8367873,8368105-8368407,
8368639-8368851,8368927-8369002,8369533-8369561,
8369610-8369984,8371784-8371927,8374053-8374086
Length = 1546
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 66 LTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASSTLRAPPSAGTSVASTGSP 233
L R+S+++ HLK G S+L R RC + A + + A +A + A SP
Sbjct: 640 LHEGRASESLTTHLKAGGASDLTSFIGRVRCSPAVALALVVAAAAAAAATAKLYSP 695
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 213 VASTGSPGPMTRRPRDRPERGVPERHSRQCR 305
+A G PG + P P RG+P R R+CR
Sbjct: 323 IARAGKPGQLAAPP---PPRGLPSRRYRRCR 350
>07_03_0142 - 14251959-14252230,14252244-14252316
Length = 114
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 290 MSFRNSTFWSISRPPRHWPRRART--CDRGTCRWRCSERTACR 168
M+ R S W R W +R R+ C RG WRC+ R R
Sbjct: 1 MAQRLSLRWMRMAGRRRWLKRRRSGRCRRGLRSWRCTAREGFR 43
>05_04_0290 + 19883904-19885109
Length = 401
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 171 ASSTLRAPPSAGTSVASTGSPGPMTRRPRDRPERGVPERH 290
A +TL + + TS+A +G P R RD RGVP H
Sbjct: 7 APATLASLSALVTSLARSGRPADALRAFRDMLARGVPPDH 46
>04_04_1367 - 32974757-32975499,32975957-32976179
Length = 321
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 661 FTLLTKEPI*CLNGNRFLKFCSR 593
FT+L+K+ + NGN +LK C+R
Sbjct: 281 FTMLSKDVVFDFNGNYYLKLCAR 303
>11_03_0164 +
10972526-10972723,10972818-10973549,10974148-10974285,
10974522-10974991,10975069-10975239,10975320-10975602,
10975682-10975795
Length = 701
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 201 AGTSVASTGSPGPMTRRPRDRPERGVP 281
A ++ S +P P TRR +D+P++G P
Sbjct: 48 AAPALLSIDAPVPSTRRMQDKPQQGEP 74
>03_05_0468 - 24630701-24631399
Length = 232
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 29 VKALGESQRLLLAYGGQEFEDN--RISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAIC 202
V G R+ LA G +E+ +++++ GQ+PVL + GK +S I
Sbjct: 15 VSMYGNRVRIALARKGVAYEEKPENLAAKSALLLSSNPVHGQVPVLLVGGKPVCESLVIL 74
Query: 203 RYLGRKYGLAG 235
++ ++ G
Sbjct: 75 EFIDEEFAGVG 85
>02_02_0490 -
10879761-10879861,10879946-10880185,10880274-10880337,
10880426-10880731,10881098-10881312,10881417-10881711,
10882193-10882357,10882477-10882527,10882657-10883109,
10883195-10883281,10883736-10884800,10884858-10885376
Length = 1186
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 731 HFLVSSRFTSQSLFTPFYGTPGFFYFVDKGTNLV 630
H+L +TS L + F+G P F V GT L+
Sbjct: 260 HWLKKDVYTSAMLISVFFGAPAFIAMVTFGTCLL 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,499,150
Number of Sequences: 37544
Number of extensions: 379373
Number of successful extensions: 1682
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1681
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -