Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00240
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)                 67   1e-11
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)                 66   3e-11
SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)                 58   7e-09
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)                 57   2e-08
SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.38 
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                31   0.88 
SB_50858| Best HMM Match : GST_N (HMM E-Value=0.00017)                 31   1.5  
SB_19093| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               29   3.5  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   29   6.2  
SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   8.2  
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               28   8.2  

>SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)
          Length = 79

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
 Frame = +2

Query: 2   PNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK--TPFGQMPVLEIDGK 175
           P+ K YYF  +   E  RL+ A  G EFEDNR++   WP+ K +   PFGQ+P+L ID K
Sbjct: 2   PSYKLYYFNARGRAEPARLVFAAAGIEFEDNRMAMGEWPKVKKELHAPFGQVPLLVIDDK 61

Query: 176 -QYAQSTAICRYLGRK 220
            + AQS AI  ++ R+
Sbjct: 62  IKLAQSLAIMTFIARE 77


>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
          Length = 221

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +2

Query: 2   PNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEIDGK 175
           PN K  YF  +   E  RL  A GG  +ED R++ E W + K   KT  G +PVLE+DG 
Sbjct: 2   PNYKLIYFNTRGRAEPTRLCFAAGGIPYEDVRLTGEEWTKMKAENKTIMGYLPVLEVDGI 61

Query: 176 QYAQSTAICRYLGRKYGL 229
           QY +S AI R   +  GL
Sbjct: 62  QYCESMAIFRLAAKLAGL 79


>SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)
          Length = 102

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = +2

Query: 2   PNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISS-ENWPEFKPK--TPFGQMPVLEIDG 172
           P+ K +YF  +   E  RL  A  G E+ED R    E W   KP+   PFGQ+P+L ID 
Sbjct: 24  PSYKLHYFNARGRAEPARLAFAAAGIEYEDKRFEGREEWLRVKPELDPPFGQVPLLVIDD 83

Query: 173 K-QYAQSTAICRYLGRK 220
           K + AQS AI  Y+ R+
Sbjct: 84  KIKLAQSMAILAYVARE 100


>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
          Length = 195

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
 Frame = +2

Query: 2   PNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEI-DG 172
           P  +  YF  +A  E  R+LL      F D R++  +W   K   + PFG++P+LEI DG
Sbjct: 3   PTYRVVYFDARARAECIRVLLHLADVPFTDERVAPPDWAAMKTSGRCPFGELPLLEISDG 62

Query: 173 KQYAQSTAICRYLGRKY 223
           ++ AQS AI R+L +++
Sbjct: 63  RKLAQSHAIFRFLAKEH 79


>SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 185 QSTAICRYLGRKYGLAGANDEE 250
           QS AI RY+GRKY + G  +EE
Sbjct: 19  QSNAILRYIGRKYDMCGKTEEE 40


>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 20  YFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFK 127
           YF V+A GE  R+LL      F + R   E+WP  K
Sbjct: 95  YFDVRARGECIRVLLHLADVPFTEERHGLEDWPAVK 130


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
 Frame = +3

Query: 9    LSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASSTLR 188
            +SST +PS   + A            +    H ++ Q   L     + +   + A+ T  
Sbjct: 807  ISSTAAPSTTLSSATEASSKKLDPKKELEFLHQQSVQLMKLAELEKKAKEANANAAKTEP 866

Query: 189  APPSAGTSVASTG----SPGPMTRRPRDRPERGVPERHSRQCRIG 311
            AP SA    + TG    +P P+  RP   P + VP +    CR G
Sbjct: 867  APGSASVPTSETGFAKFAPPPLPARPPTPPLKKVPCKFFPTCRYG 911


>SB_50858| Best HMM Match : GST_N (HMM E-Value=0.00017)
          Length = 235

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
 Frame = +2

Query: 2   PNVKFYYFP-VKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQ------MPVL 160
           P  + +Y+P +   GE  RLL       +ED  + ++   E   K  +G+       P +
Sbjct: 5   PEFRLFYWPGMSGRGEFVRLLFHETQTVYED--VFADKTFEEAAKMGYGRGKKHFAFPAI 62

Query: 161 EIDGKQYAQSTAICRYLGRK 220
           E      +Q+  ICRYLG+K
Sbjct: 63  EHGDISISQTPVICRYLGKK 82


>SB_19093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 245 RHWPRRARTCDRGTCRWRC 189
           RH P+ AR   R TCRW C
Sbjct: 17  RHPPKAARRVTRWTCRWTC 35


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 224 RTCDRGTCRWRCSERTACRR 165
           +TC+RG C+ RC+ R  C++
Sbjct: 385 QTCERGKCQLRCNTRENCKQ 404


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 168  TASSTLRAPPSAGTSVASTGSPGPMTRRPRDR-PERGVPERHSRQ 299
            T+ S  R P     S  S  SP P  R PR R P    P R +R+
Sbjct: 1071 TSPSPRRTPEDRRRSRGSRRSPSPPKREPRRRSPSASPPRREARK 1115


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 44  ESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTA 196
           E QRL+L    +E + NR ++  W E  P  P     +LEI  +Q  Q  A
Sbjct: 768 ERQRLILEQQERE-QQNRAAAAGWGEHAPVGPPPVKSLLEIQEEQARQQKA 817


>SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +3

Query: 54  GCCWLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASSTLRAPPSAGTSVASTGSP 233
           GC       S +  +F ++  +  +LR +S+R    +++  ST   PPS  TS+ S G+ 
Sbjct: 107 GCIVYFVLMSRRKSSF-IRECRKQSLRSQSLRSLS-RASVRSTRGKPPSRSTSIRSQGNT 164

Query: 234 GPMT 245
            P++
Sbjct: 165 EPLS 168


>SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 8   VKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK 133
           V  +YF  +   E  RL++   G  + +   + E+WP  K K
Sbjct: 54  VTLHYFGSRGKAEGIRLMMEDNGVLYAETNYTKEDWPTVKQK 95


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 186 RAPPSAGTSVASTGSPGPMTRRPRDRPERGVPERHSRQ 299
           ++PP    + A    P P  ++P  RP  GVP R +++
Sbjct: 422 QSPPQPSPTGAPPQRPHPPPQQPSPRPPMGVPHRGAQR 459


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   RTLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASST 182
           + LS+ +     S R   CC  T   SSK ++ +++ G  ++ ++ S   RC + T+S  
Sbjct: 164 KVLSAYVQQGVVSIRPARCCQHT---SSKVLSAYVQQGVVTSSKVLSRPARCCQHTSSKV 220

Query: 183 LRA 191
           L A
Sbjct: 221 LSA 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,311,121
Number of Sequences: 59808
Number of extensions: 416974
Number of successful extensions: 1216
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)