Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00239
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.1  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   4.4  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   7.7  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 705  CALSIFIIAAFIHHGYFDCFVFAHV-EVTVTGQSLV 601
            C  + FIIAA +H   F+C  +  +  VTV    L+
Sbjct: 983  CMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMYLL 1018


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 705  CALSIFIIAAFIHHGYFDCFVFAHV-EVTVTGQSLV 601
            C  + FIIAA +H   F+C  +  +  VTV    L+
Sbjct: 983  CMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMYLL 1018


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 122 ARMFTEVVKNNPGKSVVLS 178
           AR FT+ +KN  G  +V++
Sbjct: 434 ARFFTDCIKNREGFEMVIA 452


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = -3

Query: 160 PWIIFHYFGKHS----GCEVIV--SIFEYIREICDGCHCRDGDSKQTNDCLHVC 17
           P  + H+F K S     C+ +   SIF  +  IC+ C+    + +  N C   C
Sbjct: 36  PAFLPHHFTKRSFFDIQCKGVYDKSIFAKLDSICEDCYMLFREPQLHNLCRSEC 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,519
Number of Sequences: 336
Number of extensions: 3217
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)