Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00239
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    29   0.89 
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    28   1.6  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.1  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   2.7  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   4.8  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    26   6.3  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.3  

>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 585 CSLEIDGVTRTAAVAELSESGLTKSLCGYWYFFYPIVNRLSCDCI 451
           C + +    R  AV  +S   L++S  G W   +PI+NR    C+
Sbjct: 102 CGILVATTGRPGAVYHISFPVLSRSSFGTWGSLWPILNRSVLACV 146


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 558 RTAAVAELSESGLTKSLCGYWYFFYPIVNRLSCDCI 451
           R  AV  +S   L++S  G W   +PI+NR    C+
Sbjct: 109 RAGAVYHISFPVLSRSSFGIWGSLWPILNRAVMACV 144


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 292 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 387
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -2

Query: 362 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPILSKA 243
           TY+   I SS+ L+   S L++++S  +ASSS  PI S +
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIPSSS 703


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +1

Query: 559 RHAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYGESAHLMPN 720
           R   ++K    +  D   +S   FY  K++  K+   ++R +  +  SA + PN
Sbjct: 144 RETAFYKTIKQTMSDGSTSSRYGFYADKEQRKKLREEFERRNRMFASSARIQPN 197


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 148 FHYFGKHSGCEVIVS---IFEYIREICDGCHCRDGDSKQTNDCLH 23
           F  FG+H  CEV+++   +  +  EI  G H  D D  +    LH
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHFEIYQG-HRNDSDESENVVFLH 102


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 701 LSPYL*SPRLYIMGTLIVLSLLT*KSRSLVSRSS 600
           L   L SP LY+   ++   L T  SRSLV+RS+
Sbjct: 73  LDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSA 106


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = -2

Query: 344 ILSSTPLIDRRSRLLL--ANSVRIASSSGKPILSKALHGFHHQK------LKLTEREEAA 189
           ++SS     + SRL+L  ANSVRI  S G  IL+  L   + ++      LKL E +   
Sbjct: 734 VVSSETSSLKSSRLILSHANSVRIQRSKGDVILNLHLPKVNPERFLPTKSLKLEEMKPLE 793

Query: 188 PKMP 177
            K+P
Sbjct: 794 EKVP 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,737
Number of Sequences: 5004
Number of extensions: 57224
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)