Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00239
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 56 2e-08
11_01_0750 - 6315126-6315896,6316371-6316784 45 5e-05
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 44 1e-04
11_01_0767 + 6438648-6438809,6439146-6440000 41 0.001
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 41 0.001
05_06_0044 - 25150322-25151260 37 0.014
11_02_0011 - 7337618-7338496,7338596-7338991 36 0.025
11_02_0012 - 7346282-7347136,7347234-7347593 35 0.057
11_02_0014 - 7352619-7352918,7353173-7353418 33 0.23
11_01_0771 + 6453130-6454488 30 1.6
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 2.8
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 2.8
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 29 2.8
09_04_0527 - 18337968-18338077,18338440-18341212 29 3.8
04_04_0619 + 26652923-26653267,26653440-26654273 29 3.8
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 5.0
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 29 5.0
01_01_1152 + 9170628-9171899 29 5.0
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 28 8.7
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 28 8.7
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 8.7
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 56.4 bits (130), Expect = 2e-08
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Frame = +1
Query: 328 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEEIPI- 501
G +++ AN V+V +L +A V D + ++ + + F K A + IN+W E
Sbjct: 96 GPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFESATAG 155
Query: 502 TA*GFS*SGLAQLSHSGCSRHAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRG 681
F + +A+YFKG W SKFD R TSD FY+ + P M G
Sbjct: 156 RIKDFLPKDAVDRATPAVLGNALYFKGDWESKFDARSTSDDVFYLPDGGHVSAPFM-SSG 214
Query: 682 DYKY 693
++Y
Sbjct: 215 KWQY 218
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 45.2 bits (102), Expect = 5e-05
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Frame = +1
Query: 307 RDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDW 483
RD + G L A V+ L F ++ +V+ S + DF +K A IN W
Sbjct: 90 RDRSTSGGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSW 149
Query: 484 VEEIPI-TA*GFS*SGLAQLSHSGCSRHAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKV 660
V++ T +G + A+YF+G W + D R T+++ FY +++V
Sbjct: 150 VKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGTSVEV 209
Query: 661 PMM 669
P +
Sbjct: 210 PFV 212
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +1
Query: 448 KNTVAAKSINDWVEEIPITA*GFS*SGLAQLSHSGCSR----HAIYFKGAWSSKFDERLT 615
K A +N WVE++ G L S +R +A+YFKGAW+ KFD T
Sbjct: 209 KAAEVASQVNSWVEKVTS---GLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKT 265
Query: 616 SDRDFYVSKDKTIKVPMM 669
D +F++ K+++ P M
Sbjct: 266 KDGEFHLLDGKSVQAPFM 283
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +1
Query: 562 HAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKR 678
+A+YFKGAW+ KFD T D +F++ ++++ P M R
Sbjct: 500 NALYFKGAWAEKFDVSKTEDGEFHLLDGESVQAPFMSTR 538
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Frame = +1
Query: 415 FNSDVQNIDFSKNTVAA-KSINDWVEEIPITA*GFS*SGLAQLSHSGCSRH----AIYFK 579
+ +DF + V A K IN WV + S S +RH AIYFK
Sbjct: 42 YKGAASTVDFKNHPVEARKEINAWVAR---ATKNLITEVIKPESQSVDTRHVVGNAIYFK 98
Query: 580 GAWSSKFDERLTSDRDFYVSKDKTIKVPMMYK-RGDYKY 693
G W + FD+ T++R+F +++VP M + G Y +
Sbjct: 99 GEWLAPFDKSDTAEREFRRLDGSSVEVPFMQRPSGSYHH 137
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 562 HAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 669
+A+YFKGAW+ KFD T D +F + K++ P M
Sbjct: 40 NALYFKGAWTEKFDASKTKDGEFRLLDGKSVLAPFM 75
>05_06_0044 - 25150322-25151260
Length = 312
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 526 GLAQLSHSGCSRHAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 669
G +S S +++YF W F LT + DF+VS D ++VP M
Sbjct: 70 GGGAISASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDVRVPFM 117
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 562 HAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYG 696
+AIYFKG WS+ F T+ F+ ++ VP M R D G
Sbjct: 171 NAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFMSSREDQYIG 215
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 35.1 bits (77), Expect = 0.057
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 562 HAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYG 696
+AIYFKG WS+ F T+ F+ ++ P M R D G
Sbjct: 159 NAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFMSSREDQYIG 203
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 562 HAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYG 696
+AIYFKG WS F T+ F+ ++ V M R D G
Sbjct: 121 NAIYFKGKWSDPFPRESTTTGKFHRLDGSSVNVRFMRSREDQYIG 165
>11_01_0771 + 6453130-6454488
Length = 452
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 562 HAIYFKGAWSSKFDERLTSDRDFY 633
+AIYFKG W F+E T + FY
Sbjct: 208 NAIYFKGKWDRPFNESDTERKPFY 231
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 170 VLSAFSVLPPLAQLALASDGETHEELLKVSASLTTMLYEQNSRVKAVIFDQLKALSL 340
+ + SV L +L+L S + + AS +LY+ N+R ++ +F LK S+
Sbjct: 1616 ITNKISVSINLVELSLHSGSTRDSPMASMQASGAWLLYKSNTREESFLFATLKGFSV 1672
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +1
Query: 268 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 393
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 311 SRLLLANSVRIASSSGKPILSKALHGFHHQKLKLTEREEAAPK 183
+RLL N + SS +P++ + H QK+ L + E A P+
Sbjct: 1792 TRLLAVNGGLVPESSLRPLIGRNSHILKQQKINLLDIEAALPE 1834
>09_04_0527 - 18337968-18338077,18338440-18341212
Length = 960
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 585 CSLEIDGVTRTAAVAELSESGLTKSLCGYWYFF 487
C L ++ V R A ++L+E LT+ G W +F
Sbjct: 804 CKLTVNPVARLAEFSDLTELRLTRVYTGPWLYF 836
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Frame = +1
Query: 334 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNT-VAAKSINDWVEEIPITA* 510
+L A ++V +L F + + +++DF AA +N ++ +
Sbjct: 76 QLSFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRL 135
Query: 511 GFS*SGLAQLSHSGCS-RHAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 669
+ S S + C +A++FK W KF+ T R F+ + VP +
Sbjct: 136 NNTISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQDGTRVTVPFL 189
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 286 TEFASKSRDLRSIKGVELKMANKVYVHDG 372
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -2
Query: 326 LIDRRSRLLLANSVRIASSSGKPILSKA 243
LIDRR RLL NS A++SGK + A
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGKDDIDAA 670
>01_01_1152 + 9170628-9171899
Length = 423
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 562 HAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 669
+A++FKG WS F T F++ ++ P M
Sbjct: 194 NAVHFKGTWSLPFHPSATFHAPFHLLDGGAVRAPFM 229
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 133 KHSGCEVIVSIFEYIREICDGCHCRDG--DSKQTNDC 29
K GC+ + + + GCHC DG + + +DC
Sbjct: 386 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 422
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 133 KHSGCEVIVSIFEYIREICDGCHCRDG--DSKQTNDC 29
K GC+ + + + GCHC DG + + +DC
Sbjct: 387 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 423
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 287 QNSRVKAVIFDQLKALSLKWRIKYTFMMVEN*TRILQSFPGTSSIRTSKTLISRRI 454
+N + K +FD+LKA LK +T + EN +L F + +K I R++
Sbjct: 679 KNKKDKDEVFDELKAAGLKRPCSFTDISSEN--ALLLEFETATDAAAAKAHIRRQL 732
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,391,158
Number of Sequences: 37544
Number of extensions: 358968
Number of successful extensions: 1032
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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