Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00239
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      68   7e-12
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      53   3e-07
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      52   4e-07
SB_59335| Best HMM Match : rve (HMM E-Value=0.0065)                    30   2.2  
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   3.8  
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       29   3.8  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   5.1  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   8.9  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     28   8.9  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
 Frame = +1

Query: 262 FPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNID 441
           FP D   +     ++ +  +  G ++ MAN+++   G ++ E F   S++ F++++  +D
Sbjct: 62  FPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVD 121

Query: 442 FSKNTVAAK-SINDWVEE-IPITA*GFS*SGLAQLSHSGCSRHAIYFKGAWSSKFDERLT 615
           + KN+  A+ ++N WVE+            G+       C  +A+YFKG+W   F+   T
Sbjct: 122 YVKNSNGARDTVNRWVEQKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNAT 181

Query: 616 SDRDFYVSKDKTIKVPMMYKRGDYKYGESAHL 711
               F  +  + I+V  MY+  +++Y ES+ L
Sbjct: 182 QSGKFKTTPSQEIQVQFMYQSSEFRYLESSTL 213


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
 Frame = +1

Query: 334 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWV-EEIPITA 507
           E+++ NK++ HD  ++ E F   +R+ ++S++  +DF +K   A K +N WV ++     
Sbjct: 54  EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNI 113

Query: 508 *GFS*SGLAQLSHSGCSRHAIYFKGAWSSKFDERLTSDRDFYV--SKDKTIKVPMMYKR 678
                 G+          +A+YFKG W  +F E  T    F+V  S +  I+V MM ++
Sbjct: 114 KELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRK 172


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
 Frame = +1

Query: 334 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEE-IPITA 507
           E+ +AN +++     + + F  + +  +++D+  +D+  +   A K +N WVEE      
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108

Query: 508 *GFS*SGLAQLSHSGCSRHAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDY 687
                 G+  +       +AIYFKG W   F +  +   +F  +    ++V MM+++  +
Sbjct: 109 CDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKSKF 168

Query: 688 KY 693
           KY
Sbjct: 169 KY 170


>SB_59335| Best HMM Match : rve (HMM E-Value=0.0065)
          Length = 1020

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 286  TEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF-AVVSRDVFNSDVQNIDFSKNTVA 462
            TEF   +  L +  GVE++ A   + H      E+F   +++ +F +     ++SK   +
Sbjct: 940  TEFKGATTKLLTDHGVEVRRAEPGH-HRSQAFAESFHRWLAQRLFRAQYSKEEYSKELAS 998

Query: 463  AKSINDWVEEIPI 501
             ++  +WV  +PI
Sbjct: 999  GETNREWVTALPI 1011


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 386 RILQSFPGTSSIRTSKTLISRRIQSQLS 469
           R+  SFPG S      TL++R  QSQ+S
Sbjct: 65  RLYDSFPGASRSEAESTLLARMRQSQVS 92


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/87 (24%), Positives = 42/87 (48%)
 Frame = +1

Query: 244 AFESIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNS 423
           AF    F  DD +  E  S+++D  +++    K    +      K +E+  + S  +F+ 
Sbjct: 420 AFPRFYFLSDDEL-LEILSQTKDPTAVQPHLRKCFENIAKL---KFEEDLRISS--MFSG 473

Query: 424 DVQNIDFSKNTVAAKSINDWVEEIPIT 504
           + +N+DFS +     ++ DW+ E+  T
Sbjct: 474 EGENVDFSTDLYPTGNVEDWLLEVENT 500


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +2

Query: 62  AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 229
           +MAAV   + +L+  +      + + ++KNN  +S+   AF+ L  L  L L+S+G
Sbjct: 36  SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 70  CHCRDGDSKQTNDCL 26
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 227 HQKLKLTEREEAAPKMPRGQRFSL 156
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 227 HQKLKLTEREEAAPKMPRGQRFSL 156
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 227 HQKLKLTEREEAAPKMPRGQRFSL 156
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 227 HQKLKLTEREEAAPKMPRGQRFSL 156
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 699 LSIFIIAAFIHHGYFDCF 646
           LS++++   +HH YF CF
Sbjct: 298 LSLYVVVVTVHHHYFFCF 315


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 227 HQKLKLTEREEAAPKMPRGQRFSL 156
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +2

Query: 368 MVEN*TRILQSFPGTSSIRTSKTLISRRIQSQLSLLTIG*KKYQ*PHKDLVNPDSLSSAT 547
           +++   R+  +  G S +  SK L   R   Q SL      + Q  H++  + +S+  A 
Sbjct: 721 LIQELRRVSVAESGDSDMVPSKLLKRLRAMQQASL------EGQSDHRESTSTESVQVAR 774

Query: 548 AAVLVTPSISREHGV 592
              L++P++S  HG+
Sbjct: 775 PTKLISPTLSSSHGL 789


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,395,761
Number of Sequences: 59808
Number of extensions: 417217
Number of successful extensions: 1327
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)