Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00238
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 140 2e-34
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 137 1e-33
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 113 2e-26
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 111 1e-25
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 106 3e-24
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 97 2e-21
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 66 5e-12
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 63 4e-11
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 59 6e-10
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 58 1e-09
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 54 3e-08
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 50 4e-07
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 48 1e-06
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 47 3e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 46 5e-06
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 44 2e-05
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 42 1e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 40 4e-04
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 27 2.2
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 3.0
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 27 3.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.2
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 5.2
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 26 6.8
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 9.0
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 25 9.0
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 140 bits (339), Expect = 2e-34
Identities = 75/129 (58%), Positives = 89/129 (68%), Gaps = 10/129 (7%)
Frame = +1
Query: 271 SYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELR 450
SYPD+ VIL+CF+VDSPDSL+N+ EKW EV HFC ++PI+LV K DLRNDP I EL
Sbjct: 74 SYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRNDPKIIEELS 133
Query: 451 KMKQEPVKPQEG-GYG*KD*PFAYLECSAKSKEGVREVFETATRAAL-----QVK----K 600
K Q PV +EG K + YLECSAK+ EGVREVFE+ATRAA+ +VK
Sbjct: 134 KTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAMLKHKPKVKPSSGT 193
Query: 601 KKKTRCSLL 627
KKK RC LL
Sbjct: 194 KKKKRCILL 202
Score = 126 bits (304), Expect = 3e-30
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = +2
Query: 65 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 244
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ VELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQ 64
Query: 245 EDY 253
EDY
Sbjct: 65 EDY 67
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 137 bits (332), Expect = 1e-33
Identities = 71/127 (55%), Positives = 86/127 (67%), Gaps = 8/127 (6%)
Frame = +1
Query: 271 SYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELR 450
SYPD+ V+L+CFSVD+P+SL+N+ EKW EV HFC N+PI+LVG K DLRNDP TI EL
Sbjct: 74 SYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEELS 133
Query: 451 KMKQEPVKPQEGG-YG*KD*PFAYLECSAKSKEGVREVFETATRAAL-------QVKKKK 606
K Q+P+ +EG K + YLECSAK EGV EVFETA RA++ K KK
Sbjct: 134 KTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASMLKFKPASVPKTKK 193
Query: 607 KTRCSLL 627
K C LL
Sbjct: 194 KKHCILL 200
Score = 126 bits (303), Expect = 5e-30
Identities = 55/63 (87%), Positives = 60/63 (95%)
Frame = +2
Query: 65 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 244
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ +ELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQ 64
Query: 245 EDY 253
EDY
Sbjct: 65 EDY 67
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 113 bits (273), Expect = 2e-26
Identities = 56/122 (45%), Positives = 80/122 (65%), Gaps = 3/122 (2%)
Frame = +1
Query: 271 SYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELR 450
SYP TDV L+CFSV SP S EN+ EKW PEV H CP VP ++VG + DLR+DP+ +L
Sbjct: 71 SYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDPSVQQKLA 130
Query: 451 KMKQEPVKPQEGGYG*KD-*PFAYLECSAKSKEGVREVFETATRAALQ--VKKKKKTRCS 621
+ Q P+ ++G ++ Y+ECSA +++G++ VF+ A AAL V KKK++C
Sbjct: 131 RQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAIVAALDPPVPHKKKSKCL 190
Query: 622 LL 627
+L
Sbjct: 191 VL 192
Score = 79.0 bits (186), Expect = 7e-16
Identities = 34/60 (56%), Positives = 44/60 (73%)
Frame = +2
Query: 74 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 253
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDY 64
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 111 bits (266), Expect = 1e-25
Identities = 57/124 (45%), Positives = 77/124 (62%), Gaps = 5/124 (4%)
Frame = +1
Query: 271 SYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELR 450
SY +IL+ F++DSPDSLEN+ KW E+ CPNVP ILVG K DLR+DP I E+R
Sbjct: 76 SYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRSDPVAIEEMR 135
Query: 451 KMKQEPVKPQEGG-YG*KD*PFAYLECSAKSKEGVREVFETATRAALQVK----KKKKTR 615
+ Q VK Q+ + Y+ECS+ + +GV +VFE ATRAAL V+ K T+
Sbjct: 136 RRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFEAATRAALTVRDSENDKSSTK 195
Query: 616 CSLL 627
C ++
Sbjct: 196 CCII 199
Score = 105 bits (251), Expect = 9e-24
Identities = 47/63 (74%), Positives = 53/63 (84%)
Frame = +2
Query: 65 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 244
IR+KLV+VGDGACGKT LL VF+ FP YVPTVFENYV+D VDGK V+LALWDTAGQ
Sbjct: 7 IRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQ 66
Query: 245 EDY 253
E+Y
Sbjct: 67 EEY 69
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 106 bits (255), Expect = 3e-24
Identities = 57/122 (46%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Frame = +1
Query: 271 SYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELR 450
SYP+++VIL+CFS+D P SL N+ EKW PEV+HFCP PI+LVG K DLR D LR
Sbjct: 84 SYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRKDRNATEVLR 143
Query: 451 KMKQEPVKPQEGGYG*KD*PFAYLECSAKSKEGVREVFETATRAALQVKKK---KKTRCS 621
PV Q+ Y+ECSAK GV EVF+ A L +KK K C
Sbjct: 144 TQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVFQLA--VGLTIKKSFSFSKKSCV 201
Query: 622 LL 627
+L
Sbjct: 202 IL 203
Score = 103 bits (247), Expect = 3e-23
Identities = 48/73 (65%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
Frame = +2
Query: 41 ESSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQV 214
+ SG + KKLV+VGDG CGKTCLLIVFS FPE YVPTVFENY+ DI + K +
Sbjct: 5 KKSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVI 64
Query: 215 ELALWDTAGQEDY 253
ELALWDTAGQE+Y
Sbjct: 65 ELALWDTAGQEEY 77
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 97.1 bits (231), Expect = 2e-21
Identities = 42/63 (66%), Positives = 52/63 (82%)
Frame = +2
Query: 65 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 244
I +K+VI+GDGA GKT LL VF+K FP+VY PT+FENY+ DI VDG +EL+LWDTAGQ
Sbjct: 12 IYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQ 71
Query: 245 EDY 253
E+Y
Sbjct: 72 EEY 74
Score = 83.4 bits (197), Expect = 3e-17
Identities = 49/112 (43%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Frame = +1
Query: 271 SYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELR 450
SY DT VI++CF+VDS DSLEN+ KW PEV CP V ++LV K DLR +E +
Sbjct: 81 SYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRG----ADEEQ 136
Query: 451 KMKQEPVKPQEG-GYG*KD*PFAYLECSAKSKEGVREVFETATRAALQVKKK 603
+ + +EG K YLECSAK GV E F A R AL + +
Sbjct: 137 VDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVALAAQPR 188
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 66.1 bits (154), Expect = 5e-12
Identities = 27/61 (44%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +2
Query: 74 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 250
KL+++GD GK+CLL+ FS+D F ++ T+ ++ + IE+DGK+++L +WDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 251 Y 253
+
Sbjct: 71 F 71
Score = 32.3 bits (70), Expect = 0.078
Identities = 31/105 (29%), Positives = 48/105 (45%)
Frame = +1
Query: 292 ILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMKQEPV 471
IL+ + V S +N+ ++ +H NV IL+GNK D + R++ E
Sbjct: 85 ILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQ-------RQVSFEQG 137
Query: 472 KPQEGGYG*KD*PFAYLECSAKSKEGVREVFETATRAALQVKKKK 606
+ G K +LE SAK+ V E F T R ++KK+K
Sbjct: 138 QALADELGVK-----FLEASAKTNVNVDEAFFTLAR---EIKKQK 174
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 63.3 bits (147), Expect = 4e-11
Identities = 26/61 (42%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +2
Query: 74 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 250
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + E++GK V+L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 251 Y 253
+
Sbjct: 70 F 70
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 59.3 bits (137), Expect = 6e-10
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +2
Query: 74 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 250
K+VI+GD GKTCL+ F +F Y T+ +++ D+ VD K V L LWDTAGQE
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 251 YVGCG 265
+ G
Sbjct: 70 FQSLG 74
Score = 31.5 bits (68), Expect = 0.14
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = +1
Query: 274 YPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN----VPIILVGNKKDLRNDPATIN 441
Y D ++ ++V++ S +++ E W E + P I+VGN+ D ++
Sbjct: 78 YRGADCCVIVYNVNNSKSFDSV-ENWRQEFLYQTSQDECAFPFIIVGNQIDKDASKRAVS 136
Query: 442 ELRKMKQEPVKPQEGGYG*KD*PFAYLECSAKSKEGVREVFETATRAALQ 591
R + + K + G + E SAK V ++FET +R AL+
Sbjct: 137 LHRAL--DYCKSKHGSN------MIHFEASAKENTNVTDLFETVSRLALE 178
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = +2
Query: 74 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 253
KLV+VGDG GK+ L I + F + Y PT+ ++Y E+DG+ L + DTAGQE+Y
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEY 69
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 53.6 bits (123), Expect = 3e-08
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +2
Query: 56 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVD-GKQVELALW 229
+ I +KLV++GD A GK+ L++ F KDQF + T+ ++ + +D V+L +W
Sbjct: 10 VVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIW 69
Query: 230 DTAGQEDY 253
DTAGQE Y
Sbjct: 70 DTAGQERY 77
Score = 28.7 bits (61), Expect = 0.97
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Frame = +1
Query: 274 YPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRNDPATINELR 450
Y + + ++ + + SLE + W E++ P + I L GNK DL + +
Sbjct: 85 YRNANCAIVVYDITQAASLEKA-KSWIKELQRQAPEGIVIALAGNKLDLAQERRAVE--- 140
Query: 451 KMKQEPVKPQEGGYG*KD*PFAYLECSAKSKEGVREVFETATRAALQVKKK 603
K E + + E SAK+ E V E+F TA L ++ K
Sbjct: 141 KADAEAYAAEAN--------LLFFETSAKTAENVNELF-TAIAKKLPLEDK 182
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 50.0 bits (114), Expect = 4e-07
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +2
Query: 62 AIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 235
++RK KLV +G+ + GKT L+ F DQF Y T+ ++++ + ++ + V L LWDT
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 67
Query: 236 AGQEDY 253
AGQE +
Sbjct: 68 AGQERF 73
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +2
Query: 74 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 250
K++I+G+ GKT ++ + +F + Y T+ +++ ++ VD K V L LWDTAGQE
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 251 YVGCG 265
+ G
Sbjct: 70 FQSLG 74
Score = 31.5 bits (68), Expect = 0.14
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Frame = +1
Query: 274 YPDTDVILMCFSVDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKDLRNDPATI 438
Y D ++ + V++ S E + + W E + P+ P IL+GNK D+ +
Sbjct: 78 YRGADCCVLVYDVNNSKSFETL-DSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMV 136
Query: 439 NELRKMKQEPVKPQEGGYG*KD*PFAYLECSAKSKEGVREVFETATRAALQ 591
++ + + + + Y E SAK V+E FET + AL+
Sbjct: 137 SKSKALAFCQARGE----------IPYFETSAKEAINVQEAFETVAKLALE 177
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 47.2 bits (107), Expect = 3e-06
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +2
Query: 74 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 250
K V++GD GK+ LL+ F++++F T+ + +I +D K+++ +WDTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 251 Y 253
Y
Sbjct: 72 Y 72
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 46.4 bits (105), Expect = 5e-06
Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 56 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 232
MA I+ +++ ++G + GK+ L + + ++ F E Y PT+ + +I+ G++ + D
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIID 60
Query: 233 TAGQEDY 253
TAGQ++Y
Sbjct: 61 TAGQDEY 67
Score = 27.5 bits (58), Expect = 2.2
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +1
Query: 295 LMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRNDPATINELRKMKQEPV 471
++ +S+ S S E + + H VPI++VGNK DL Q V
Sbjct: 82 VLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLH------------MQRAV 129
Query: 472 KPQEGGYG*KD*PFAYLECSAKSKEGVREVFE 567
+EG + A+ E SA+ E V FE
Sbjct: 130 TAEEGKALANEWKCAWTEASARHNENVARAFE 161
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +2
Query: 74 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTA 238
K+V+ G GK+CLL F K+Q+ + TV ++ + I G K+++L +WDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 239 GQEDYVGCGRS 271
GQE + R+
Sbjct: 71 GQEKFRSVARN 81
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 74 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 250
K+ ++GD + GKT L++ + + F E T+ N++ I + ++ ++WD GQ +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 251 YV 256
+V
Sbjct: 72 FV 73
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 74 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 250
KLV+VGDG GKT + +F + Y+ T+ E + + ++ +WDTAGQE
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 251 YVG 259
G
Sbjct: 71 LGG 73
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 295 LMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 420
++ F V S + +N+P W V+ C N+PI+L GNK D++
Sbjct: 86 IIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNKVDVK 126
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -3
Query: 237 AVSHRASSTCFPSTSMSAT*FSNTVGTYTSGN*SLLNTISR 115
A S+ ++S +PSTSMSA+ S + TS + S ++ SR
Sbjct: 500 ATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSR 540
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 295 LMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK-KDLRN 423
++C S E + W P + NVPI+L NK +DL N
Sbjct: 77 VICLVYSDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSEDLDN 120
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 235 GIPQSQFHLFSIHFDVGNVILKHCRHVYFRELILAEH 125
G QS+ +IH + +++H ++ YF++L+ +H
Sbjct: 325 GSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQH 361
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 38 PESSGPMAAIRKK--LVIVGDGACGKTCLL 121
P + I KK ++VGD A GKTC+L
Sbjct: 1857 PVLESVITCINKKWPCILVGDTATGKTCIL 1886
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = -3
Query: 327 RIRRVHREAH----EDHIRIWIRERPQPT*SSWPAVSHRASSTCFPSTSMSAT*FSNTV 163
R R V H E + W E P S+W + +ASS P + S T FS ++
Sbjct: 529 RCRMVKNNEHGWVVETPTKSWSFEDPNGPASAWVELLDKASSISLPFGNHSVTSFSRSI 587
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 123 ISRHVLPHAPSPTITNFLRIAAIGPED 43
I H+LP+ TITNF R+ G D
Sbjct: 188 IENHLLPNELPLTITNFFRLGTPGFTD 214
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 322 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 420
DS E + WTPE+ + V +I + +K +R
Sbjct: 367 DSKEQLLAYWTPEITNQPARVALISIPSKSTIR 399
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 56 MAAIRKKLVIVGDGACGKT-CLLIVFSKDQFPEVYVPTVFENYVADIEV 199
M K L I+G G T C +FS++ + ++ E ++ DIEV
Sbjct: 214 MHCFHKLLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEV 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,881
Number of Sequences: 5004
Number of extensions: 66157
Number of successful extensions: 260
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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