Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00238
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.5  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 115 SADSVQQGSIPG-SIRADSV*ELRCRHRSGWKTSGTGSVGY 234
           +A S   G  P  +I ADS  EL  R R G+K +G   + Y
Sbjct: 168 TAASTVLGFFPALNIVADSFIELIRRQRVGYKVTGFEELAY 208


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 573 NQSRIT-GQEEEED*VFSAVSVLLSGKL 653
           +Q+ +T G+E++ +  FS +SVLL G L
Sbjct: 4   SQNNLTDGKEDQPENTFSLLSVLLVGFL 31


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 198 WMENKWNWLCGIPLAKKITSAAAALVSRY 284
           W+ N W   C    AKK+T    ++ + Y
Sbjct: 83  WLHNIWRPDCFFKNAKKVTFHEMSIPNHY 111


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 198 WMENKWNWLCGIPLAKKITSAAAALVS 278
           W +  W W  GI   +   S  ++ VS
Sbjct: 95  WQQYPWQWGLGICKLRAYVSETSSYVS 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,368
Number of Sequences: 438
Number of extensions: 4116
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)