Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00237
         (772 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IJ40 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_Q54ED7 Cluster: Putative uncharacterized protein; n=2; ...    33   5.9  

>UniRef50_Q8IJ40 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 464

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 419 SNIYFRYLVPVTQVLYEHNTGPVNWRNIVSNIYIYL--LFNYFAV 547
           SNI    L+P+T+ +Y + T   N +     +YIY+  +FN+F++
Sbjct: 353 SNIILSTLLPITKYMYSNKTQSTNMKFYFYYMYIYMAQVFNHFSI 397


>UniRef50_Q54ED7 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 2552

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +2

Query: 335 PAKGDMININVFSRVMDVY*IYVCV**KSNIYFRYLVPVTQVLYEHNTGPVNWRNIVSNI 514
           P K +++ I+ F      Y I+  V   +N+Y       T+ +Y++   PV + N +SNI
Sbjct: 748 PVKDEILKIS-FKSKQSTYPIFSTV--TTNLYDEMNPFDTKYVYDNIINPVRFTNTISNI 804

Query: 515 YIYLLFNY 538
           Y ++  NY
Sbjct: 805 YKHIELNY 812


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,153,738
Number of Sequences: 1657284
Number of extensions: 11127813
Number of successful extensions: 22428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22416
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)