Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00237
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016443-12|AAC24279.2|  340|Caenorhabditis elegans Seven tm rec...    29   2.8  
Z81546-6|CAB04457.1|  425|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AF016443-12|AAC24279.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 229 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 473 NTGPVNWRNIVSNIYIYLL 529
           N  PVNWR+I+ NI I +L
Sbjct: 191 NWSPVNWRSIIGNILIVML 209


>Z81546-6|CAB04457.1|  425|Caenorhabditis elegans Hypothetical
           protein F53A2.9 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 315 LCSDHVTYHYTRRPLNFINCITISIYCR 232
           L  + V+ H+TR+ LNF+N   I+I  R
Sbjct: 256 LTFNRVSTHFTRKTLNFVNSPMINIVAR 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,851
Number of Sequences: 27780
Number of extensions: 278587
Number of successful extensions: 556
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)