Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00237
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to ...    29   3.4  
At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to ...    29   3.4  
At5g02890.1 68418.m00232 transferase family protein contains Pfa...    29   4.5  

>At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to
            aldehyde oxidase AAO1 from Arabidopsis thaliana
            [gi:3172023] isoform contains a GA-donor splice site at
            intron 10
          Length = 1368

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 440  LVPVTQVLYEHNTGPVNWRNIVSNIY 517
            L+PV   L E   GPV W +++S  Y
Sbjct: 1142 LLPVKTALVEQTGGPVTWDSLISQAY 1167


>At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to
            aldehyde oxidase AAO1 from Arabidopsis thaliana
            [gi:3172023] isoform contains a GA-donor splice site at
            intron 10
          Length = 1368

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 440  LVPVTQVLYEHNTGPVNWRNIVSNIY 517
            L+PV   L E   GPV W +++S  Y
Sbjct: 1142 LLPVKTALVEQTGGPVTWDSLISQAY 1167


>At5g02890.1 68418.m00232 transferase family protein contains Pfam
           profile PF02458: Transferase family
          Length = 353

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = -2

Query: 348 SPLAGLEPATPLCSDHVTYHYTRRPLNFINCITISIYCRIINVIIYWR 205
           S +AG++   P+    VT H   R ++ ++ + + I+ R +N++ Y++
Sbjct: 8   SMIAGVQTVMPV---EVTQHREIRSVSVVDPVGVGIFRRTVNIVTYYK 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,841,554
Number of Sequences: 28952
Number of extensions: 240219
Number of successful extensions: 440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)