Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00236
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    31   0.25 
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.75 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    28   1.3  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    28   1.7  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.0  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   4.0  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   5.3  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   5.3  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    26   5.3  
SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    26   7.0  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   7.0  

>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 124 IAYFKLLDYDETHVVCSLISCITTIVINIKCSFNLAK 234
           IAY K L+Y +  V    I+CI  +     CS NL K
Sbjct: 614 IAYLKHLEYVDAAVYLDYIACIPLVPAYQACSINLTK 650


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 566 TLHILIFVKLIENKYSCFSSL 504
           +LH L FVK+I   Y CFSSL
Sbjct: 134 SLHYLKFVKIIALSYICFSSL 154


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 233  SNSMAFVSKNRILNAGNYEASNKRRLSNRSRTLYFTILHCRLITLDXXXXXXIHFVIYMT 412
            S S +  ++N+ +NA          L+NR   L F++L C++          I F+ + T
Sbjct: 1306 SRSPSSKNRNQHMNAQIVTVRPLPELNNRELRLEFSVLPCKMYIDQDTLDFLIRFLTFQT 1365

Query: 413  NLSFSLLGRTP 445
              S   L   P
Sbjct: 1366 PSSSETLNTEP 1376


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 437 RTPVSGHQNGSKKSLRIPIKNCTMMRNK 520
           RTP+SG   G + S+ I ++N  +MRN+
Sbjct: 367 RTPISGELEGREDSVTIEVRN-QLMRNR 393


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 436 KDTSFRPSKWVKKIPENPDKKL-YNDEKQEYLFSINFTKIKI 558
           +D   RPSK  K +P N   +L Y       +F IN    KI
Sbjct: 144 QDNKIRPSKIPKSLPSNSPVRLPYISSLLSAVFEINMENAKI 185


>SPBC32H8.08c |||mannosyltransferase complex subunit
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 89 TIHVWKLINALILKLRL 39
          T+HVWKLI  LI K  L
Sbjct: 23 TLHVWKLIKLLICKFLL 39


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 401 IYMTNLSFSLLGRTPVSGHQNGSKKSLRIPIKNCTMMRNKNTYFQLISRKSKY 559
           IY+ +   S+    P+S H N S++ L +  K   + R  +  F  IS+  K+
Sbjct: 209 IYVRHRKSSITLSNPLSIHDNLSEEELDLLYKQLILSRENDFTFPYISQPWKF 261


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +1

Query: 325 DSLFYYITLSTYYARLKLIKLNTFCNLYDQSKFFVIGKDTSFRPSKWV 468
           D  FY   +  +Y  LK   LNT        KF +  +      S WV
Sbjct: 301 DDAFYEAHIELHYQFLKEASLNTLIKDKKMLKFIITVRPVHLHVSPWV 348


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +1

Query: 499 LYNDEKQEYLFSINFTKI 552
           LY+DE ++YL+SIN TKI
Sbjct: 92  LYSDENEKYLWSIN-TKI 108


>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
 Frame = -1

Query: 369 SSVISRQCNIVK*RVLERFDSRRLLLAS*FPAFKMRFLLTNAIELLR*IKTTLNIYYYGS 190
           +SV+S+  N V    L+R   RR++  +   A++ R L  + +E +  I ++L+ Y    
Sbjct: 235 ASVVSKTPNNVI-YALDRTSFRRIVFEN---AYRQRMLYESLLEEVP-ILSSLDKYQRQK 289

Query: 189 NAGN*RA--YNMSFIVIKQLEIGNAVYYIYIG 100
            A   +   Y    IVI+Q +IGN  Y I  G
Sbjct: 290 IADALQTVVYQAGSIVIRQGDIGNQFYLIEDG 321


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 451 RPSKWVKKIPENPDKKLYNDE---KQEYLFSINF 543
           +P+KW + + + PD K   D+   KQ+ LF + F
Sbjct: 341 QPAKWSEPVADFPDTKCDIDKMFSKQKILFDLTF 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,312
Number of Sequences: 5004
Number of extensions: 60862
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)