Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00236
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0158 + 1111819-1111972,1113311-1114869                           31   1.4  
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435...    29   3.2  
08_01_0323 - 2903700-2903795,2903817-2903916,2904068-2904183,290...    28   9.6  

>07_01_0158 + 1111819-1111972,1113311-1114869
          Length = 570

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 72  FPDVNGNTINQYKCNKLHCLFQAA*LR*NSCCMLSNFLHYYHSN 203
           FP V G+ I     N+ HCL     L+     ML   + Y+H N
Sbjct: 429 FPSVEGSVIEVINANEQHCLHTNIALQQMEEIMLPRAVDYFHQN 472


>08_01_0501 +
           4345522-4345720,4346598-4347167,4347294-4347366,
           4351133-4353092,4353465-4353840,4353932-4354326,
           4354597-4354765,4355444-4355518,4357699-4357826,
           4357988-4358213,4358290-4358417,4358505-4358768
          Length = 1520

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 464 HFDGLKLVSFPITKNLDWSYKL 399
           H DG+ L +FPI + LD SY L
Sbjct: 567 HVDGISLFAFPILRVLDLSYSL 588


>08_01_0323 -
           2903700-2903795,2903817-2903916,2904068-2904183,
           2904273-2904561,2905520-2905548,2906154-2906294
          Length = 256

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 548 FVKLIENKYSCFSSLYNFLSGFSGI 474
           +++L +  + CF + YN LSG S +
Sbjct: 118 YIRLDDMSFPCFDTKYNILSGLSNV 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,832,925
Number of Sequences: 37544
Number of extensions: 304151
Number of successful extensions: 592
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)