Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00236
         (783 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF519440-2|ABP73490.1|  165|Anopheles gambiae CTL4 protein.            25   2.6  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   3.5  

>EF519440-2|ABP73490.1|  165|Anopheles gambiae CTL4 protein.
          Length = 165

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 628 DVIVCLVIFVGGYRVHTA 681
           D +VCL++   GYR  TA
Sbjct: 1   DTLVCLIVSTHGYRATTA 18


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +1

Query: 430 IGKDTSF-RPSKWVKK--IPENPDKKLYNDEKQEY 525
           + K+ +F RP   V K  + ENP ++L ND+++E+
Sbjct: 431 LSKNATFSRPVSVVLKGRLLENPSRRLRNDKQREF 465


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,396
Number of Sequences: 2352
Number of extensions: 14314
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)