Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00236
         (783 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC128608-1|AAI28609.1|  441|Homo sapiens reticulon 4 receptor-li...    31   4.7  
AY250219-1|AAP82836.1|  441|Homo sapiens nogo receptor-like 2 pr...    31   4.7  
AF532859-1|AAP21836.1|  441|Homo sapiens Nogo-66 receptor homolo...    31   4.7  

>BC128608-1|AAI28609.1|  441|Homo sapiens reticulon 4 receptor-like
           1 protein.
          Length = 441

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 434 GRTPVSGHQNGSKKSLRIPIKNCTMMRNKN 523
           G T   GH +G +   R P KNCT  RN+N
Sbjct: 334 GPTRSKGHPHGPRPGHRKPGKNCTNPRNRN 363


>AY250219-1|AAP82836.1|  441|Homo sapiens nogo receptor-like 2
           protein.
          Length = 441

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 434 GRTPVSGHQNGSKKSLRIPIKNCTMMRNKN 523
           G T   GH +G +   R P KNCT  RN+N
Sbjct: 334 GPTRSKGHPHGPRPGHRKPGKNCTNPRNRN 363


>AF532859-1|AAP21836.1|  441|Homo sapiens Nogo-66 receptor homolog-2
           protein.
          Length = 441

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 434 GRTPVSGHQNGSKKSLRIPIKNCTMMRNKN 523
           G T   GH +G +   R P KNCT  RN+N
Sbjct: 334 GPTRSKGHPHGPRPGHRKPGKNCTNPRNRN 363


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,989,587
Number of Sequences: 237096
Number of extensions: 1887742
Number of successful extensions: 2343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2343
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)