Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00236
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical...    29   2.8  
AF039719-8|AAO12411.1|  338|Caenorhabditis elegans Mutator prote...    29   5.0  
AF039719-7|AAB96748.1|  441|Caenorhabditis elegans Mutator prote...    29   5.0  
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    28   6.6  

>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
            protein Y22D7AR.2 protein.
          Length = 1140

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 159  SFIVIKQLEIGNAVYYIYIGLWCYHSR 79
            S+I +  +       ++YIGLW YHSR
Sbjct: 984  SYIGLSLIVCSFVALFVYIGLWFYHSR 1010


>AF039719-8|AAO12411.1|  338|Caenorhabditis elegans Mutator protein
           2, isoform b protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 464 HFDGLKLVSFPITKNLDWSYKLQNVFS 384
           HFD  K       K +DW Y+L+N+ S
Sbjct: 53  HFDTTKQPKEEFGKKMDWCYQLKNIIS 79


>AF039719-7|AAB96748.1|  441|Caenorhabditis elegans Mutator protein
           2, isoform a protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 464 HFDGLKLVSFPITKNLDWSYKLQNVFS 384
           HFD  K       K +DW Y+L+N+ S
Sbjct: 53  HFDTTKQPKEEFGKKMDWCYQLKNIIS 79


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
 Frame = +1

Query: 298 QAPTIEPF*DSLFYYITLSTY-YARLKLIKLNTF-------CNLYDQSKFFVIGKDTSFR 453
           +A  + PF + L  ++  S Y +  L+  K   F       C   + +K   +  D    
Sbjct: 52  EAEDMGPFVEQLLPFVRASAYNWFHLQAAKRRHFKEFDKKMCASEENAKLAELQNDRDEL 111

Query: 454 PSKWVKKIPENPDKKLYNDEKQEYLFSIN 540
             KW  ++     K + ND+K+ ++ +IN
Sbjct: 112 KVKWASRLLGKIKKDIQNDDKEAFISAIN 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,243,895
Number of Sequences: 27780
Number of extensions: 329939
Number of successful extensions: 755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)