Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00236
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 328 SLFYYITLSTYYARLKLIKLNTFCNLYDQS 417
           S F  I L T   R+  ++  T+CNL+  S
Sbjct: 518 SYFGEICLLTNARRVASVRAETYCNLFSLS 547


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 328 SLFYYITLSTYYARLKLIKLNTFCNLYDQS 417
           S F  I L T   R+  ++  T+CNL+  S
Sbjct: 486 SYFGEICLLTNARRVASVRAETYCNLFSLS 515


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 216 TLNIYYYGSNAGN*RAYNMSFIVIKQLEIGNAVYYI 109
           T +  YYG  AGN  + +++F + +++      YYI
Sbjct: 205 TTSQQYYGHFAGNFSSISITFKLAREMGFFMMDYYI 240


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 527 KYSCFSSLYNFLSGFSGIFLTHFD 456
           KY C + L++ + GF      H D
Sbjct: 406 KYDCVTLLFSGIVGFGAYCAAHTD 429


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 527 KYSCFSSLYNFLSGFSGIFLTHFD 456
           KY C + L++ + GF      H D
Sbjct: 406 KYDCVTLLFSGIVGFGAYCAAHTD 429


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +2

Query: 236 NSMAFVSKNRILNAGNYEASNKRRLSNRSRTLYFT 340
           +S   + + R    GNY       +  R R  YFT
Sbjct: 271 DSKCSLCQRRFEEQGNYSCLKVDLIFTRDRAFYFT 305


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 259 KSHLERRKLRGKQQAPTIEPF*DSLFYYITLSTYY 363
           +SHL   + R  Q  PT+      LF Y  +S+ Y
Sbjct: 347 QSHLISNENRDFQTTPTVSVEQPHLFLYPEVSSTY 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,728
Number of Sequences: 438
Number of extensions: 4218
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)