Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00236
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate syntha...    29   2.6  
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    28   6.1  
At1g61680.1 68414.m06957 terpene synthase/cyclase family protein...    28   6.1  

>At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325, GI:4468259 from (Pichia
           angusta); contains Pfam profiles PF00982:
           Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 730

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 497 FLSGFSGIFLTHFDGLKLVSFPITKNLDWSYKLQNVF 387
           +L+  +G+FL H     + + P   NLDW   L+NVF
Sbjct: 499 WLAAENGMFLKHTTEEWVTNMPQNMNLDWVDGLKNVF 535


>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 413 NLSFSLLGRTPVSGHQNGSKKSLRIPIKNCTMMRNKNT 526
           N+ FS   ++PVSG +NG+      P+ + T MR+ ++
Sbjct: 232 NMGFSRRNQSPVSGFENGNLVDGFQPLSSRTWMRSPSS 269


>At1g61680.1 68414.m06957 terpene synthase/cyclase family protein
           similar to 1,8-cineole synthase [GI:3309117][Salvia
           officinalis]; contains Pfam profile: PF01397 terpene
           synthase family
          Length = 569

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 484 NPDKKLYNDEKQEYLFSINFTKIK-IWSVN 570
           NP K+ +N    EYL  +N  KIK I S N
Sbjct: 57  NPSKQFHNKTSLEYLHELNIKKIKNILSAN 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,722,136
Number of Sequences: 28952
Number of extensions: 282121
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)