Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00235
         (816 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.8  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.8  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   3.8  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 405 YANVCNTTMKNSTPQ 361
           + NV NTT++N TPQ
Sbjct: 450 FHNVTNTTLQNLTPQ 464


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 427 VPSPQFGIDRSATAGVGGGPS*GRS 501
           V +P++G  R+++A   GGP  GR+
Sbjct: 50  VTTPRWGCARASSATTMGGPRYGRA 74


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 737 NAWWAVHPT 763
           NAWW VH T
Sbjct: 187 NAWWDVHST 195


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 491 QLGPPPTPAVALRSMPNCGEGTVRP 417
           QL P PT + +  S P  G G + P
Sbjct: 84  QLMPSPTVSGSEMSSPGAGSGNLSP 108


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 491 QLGPPPTPAVALRSMPNCGEGTVRP 417
           QL P PT + +  S P  G G + P
Sbjct: 84  QLMPSPTVSGSEMSSPGAGSGNLSP 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,652
Number of Sequences: 336
Number of extensions: 4506
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)