Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00235
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 40 4e-04
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 30 0.45
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 29 0.60
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 29 1.0
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 27 3.2
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 5.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.4
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 7.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 7.4
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 7.4
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 9.7
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 9.7
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 9.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.7
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 25 9.7
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 39.9 bits (89), Expect = 4e-04
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 5/162 (3%)
Frame = +2
Query: 284 MFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILW--DVQFXXXXXXXXX 457
+FV V L L G +V+ + + A G L F+ +LQ FAY ++ ++ F
Sbjct: 99 LFVCVVLM--LVGSTLVVFKKRQAYAIGSLLFVTLLQAFAYGLITSGEMFFRNMSVIGGL 156
Query: 458 XXXXXXXXXXXXXXXCSGRAVARREQTEDVLATRRRILLAFMFITLLRFE---ISFLQII 628
+G R+LL FMF+ LL E IS+ +I+
Sbjct: 157 CLVASDTFIHRRINRFAGLPAVSEHNKRTYFQLAGRVLLIFMFLGLLAKEGSGISWTRIL 216
Query: 629 QDLLGSILMILVTVGYRTKXXXXXXXXXXXXXXXYHNAWWAV 754
+L +V +G++ K N++W+V
Sbjct: 217 VHILSVTACAMVVIGFKAKFFAAVLVLILSVANFIINSFWSV 258
Score = 34.3 bits (75), Expect = 0.021
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 156 LPTVARLCLISTFLEDGLRMWFQWSEQRDYM 248
+P + R +++T+ ED +R+ QW EQ YM
Sbjct: 54 MPLLGRFLIVATYFEDAIRIVTQWPEQVSYM 84
Score = 33.5 bits (73), Expect = 0.037
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 765 PLRDFLKYDFFQTLSVI 815
P RDF +YDFFQTLS++
Sbjct: 263 PYRDFYRYDFFQTLSIV 279
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.9 bits (64), Expect = 0.45
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 189 TFLEDGLRMWFQWSEQRDYMDMP 257
T +DGLR+W W +D D+P
Sbjct: 181 TIRKDGLRLWGSWKRGKDESDLP 203
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 29.5 bits (63), Expect = 0.60
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 84 QIPNEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQ 224
QIP STA+ A+ + ++ + LP V C TF D L +FQ
Sbjct: 41 QIPQIEGSTAKRDAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQ 87
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 378 KNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPQACPCSLSALTTGT 217
KN PQ + + ++ PN P F++ + + PQP P S S TTGT
Sbjct: 19 KNGVPQEVIVIEDSASPRLTPNLPPPFSVHQLQSFVPPQP---PSSSSPSTTGT 69
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -3
Query: 721 NCQYEDK---HQSRQLRPVAHRHQYHQDAPEKI--LYDLQE*DFKS*ERDEHEGQQ 569
N +DK H+S R ++ +YHQD P+K Y L+E D +R E E +Q
Sbjct: 256 NSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDK---QRKEFENRQ 308
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 414 SILYANVCNTTMKNSTPQAISTLSLPSTITH 322
+I +N NTT ST Q S+ +PS + H
Sbjct: 48 AIPQSNALNTTPNESTSQIDSSPKIPSAVPH 78
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 494 PQLGPPPTPAVALRSMPNCGE 432
P PPP PA + S+PN G+
Sbjct: 1728 PSAPPPPLPASSAPSVPNPGD 1748
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 387 TTMKNSTPQAISTLSLPST-ITHPP 316
T STPQ +T S P+T THPP
Sbjct: 279 TPQSGSTPQMQNTTSQPTTHDTHPP 303
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 7.4
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 2/106 (1%)
Frame = +1
Query: 163 LW-RDCALYP-HSWRTVSACGSSGQSRETTWTCLGLRQIPRHNVCDSKFIWSIRRMCYGA 336
LW D YP S T + S+G T+ T +P + + SI C GA
Sbjct: 737 LWANDAVYYPVSSSSTTTTSTSTGSVTTTSTTATASCTLPI-SYTSTPTTTSISGTCNGA 795
Query: 337 RKAQSGYRLRRAVLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGV 474
S Y VL + + Q G Q+G D A V
Sbjct: 796 TFDASLYVCDGTVLCPIVNGVSYQNCNGACYNPSQYGCDNGALGPV 841
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -1
Query: 423 TSHSILYANVCNTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPQA 253
TS S +NV +++ + SL S I PP P+ + + N+P+P A
Sbjct: 215 TSTSGSSSNVAAEVSNDASQPSNQDSSLNSNIVKPPLPPSNVQSNSSSSENVPKPNA 271
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 390 NTTMKNSTPQAISTLSLP 337
NTTMK+S QA++ ++LP
Sbjct: 226 NTTMKSSLNQALTLINLP 243
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.4 bits (53), Expect = 9.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 195 LEDGLRMWFQW 227
L DG+R+WF+W
Sbjct: 601 LTDGMRVWFEW 611
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -3
Query: 808 DNVWKKSYLRKSLSGCRMHRPPRVMV 731
+++WK Y+ +SL RPP + +
Sbjct: 500 ESIWKALYINESLEASSKTRPPFISI 525
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.7
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -1
Query: 429 NCT-SHSILYANVCNTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNI--VARNLPQP 259
NCT S S+LY + T+ +T ++ S+P T T P + +TI++ V
Sbjct: 531 NCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTST--PVTSSNYTISSSTPVTSTPVTT 588
Query: 258 QACPCSLSALTTGT 217
C S S L T T
Sbjct: 589 TNCTTSTSVLYTST 602
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 435 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHPP 316
R +C H + C+ K +S+++LPS + +PP
Sbjct: 116 RNDCIFHDA--SGACHFFFKEVGNWTVSSIALPSNLANPP 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,592
Number of Sequences: 5004
Number of extensions: 68086
Number of successful extensions: 226
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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