Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00235
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 32 0.63
10_02_0080 + 5019932-5020318 30 2.5
12_02_0766 - 22982606-22983288,22984352-22984706 29 3.3
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282 29 3.3
11_06_0730 - 26728241-26729335,26729998-26730660 29 4.4
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888... 29 4.4
04_03_0060 - 10511421-10512494 29 4.4
06_03_1453 - 30258527-30258685,30259823-30260071,30260383-302604... 29 5.8
08_02_0685 + 20039318-20040433,20040574-20040982,20042906-200429... 28 7.7
08_01_0437 + 3850137-3850581,3851134-3851159 28 7.7
07_01_0535 + 3952066-3952986 28 7.7
04_04_0734 + 27648661-27649596 28 7.7
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 31.9 bits (69), Expect = 0.63
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 563 DGELQVRLRFVLSERRHAPNRLRPQLGPPPTPAVALRSMP 444
D +L+ +++ +L ++R P P GPP TP++ LR P
Sbjct: 308 DNKLESQIKKLLDKKRRQPTA--PSWGPPATPSLHLRQRP 345
>10_02_0080 + 5019932-5020318
Length = 128
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 414 SILYANVC-NTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPQAC 250
S+ AN C +T+ N +P + P+ T P N N N+++ N+P Q C
Sbjct: 19 SVEVANGCGDTSCSNPSPPPPPAVPTPTGGTCPINVLNLAVCANVLSLNVPSSQCC 74
>12_02_0766 - 22982606-22983288,22984352-22984706
Length = 345
Score = 29.5 bits (63), Expect = 3.3
Identities = 9/35 (25%), Positives = 15/35 (42%)
Frame = +1
Query: 175 CALYPHSWRTVSACGSSGQSRETTWTCLGLRQIPR 279
C YP +W + C G+S+ W + + R
Sbjct: 170 CIGYPPAWEKIKICSGHGRSKHGAWRVYAMSDVGR 204
>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
Length = 367
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 208 SACGSSGQSRETTWTCLGLRQIPRHNVCDS--KFIWSIRRMCYGARKAQSGYRLRRAVLH 381
SA ++ R T G R+ + V D+ + + +RR+ YG R+ SG RL R L
Sbjct: 104 SAAAAAPTGRPGT-VAAGTRRAGKKAVLDAGGRRVGHLRRLSYGVRERGSGRRLTR--LG 160
Query: 382 SCITDIRVQYTMG 420
C+T+ V + G
Sbjct: 161 WCMTEFGVDHGGG 173
>11_06_0730 - 26728241-26729335,26729998-26730660
Length = 585
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = +1
Query: 169 RDCALYPHSWRTVSACGSSGQSRETTWTCLGLRQIPRHNVCDSKFIWSI 315
R AL P S CGS+ S +CL RQ C S FIWS+
Sbjct: 151 RSAALLPISCSR--CCGSASDSLLERLSCLS-RQFDFIRCCQSLFIWSV 196
>08_02_1620 -
28288152-28288353,28288469-28288557,28288634-28288828,
28289082-28289423,28290227-28291672,28292590-28292666,
28293160-28294509,28295921-28296029,28296896-28297007,
28297800-28297957
Length = 1359
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 578 RPAGCDGELQVRLRFVLSERRHAPNRLRPQLGPPPTPAVALRSMPNCG 435
+P +LQ + ++S+ + PN+L+ QLG P P + R + G
Sbjct: 502 QPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAG 549
>04_03_0060 - 10511421-10512494
Length = 357
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -2
Query: 569 GCDGELQVRLRFVLSERRHAPNRLRPQLGPPPTPA 465
G GE ++R +SERR P P GPPPTPA
Sbjct: 152 GSAGERRLRAA-AISERRAPP---LPAAGPPPTPA 182
>06_03_1453 -
30258527-30258685,30259823-30260071,30260383-30260477,
30260543-30260657
Length = 205
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 618 RNEISNLKSVMNMKASRMRRRVASTSSVCSLRAT 517
R E+S L + K+ R R RVA T +VC R T
Sbjct: 104 RPEVSTLPWSLFTKSPRRRMRVAFTCNVCGQRTT 137
>08_02_0685 +
20039318-20040433,20040574-20040982,20042906-20042973,
20043336-20043518,20043641-20043964,20045653-20045694
Length = 713
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 500 LRPQLGPPPTPAVALRSMPNCGEGTVRPIVYCTRMSVIQL 381
L+P L PPP PAVAL S G R ++ C V+ L
Sbjct: 386 LQPPLPPPPQPAVALAS------GLERRLLLCGSDEVVML 419
>08_01_0437 + 3850137-3850581,3851134-3851159
Length = 156
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 464 VALRSMPNCGEGTVRPIVYCTRMSVIQL*RTARRKRYP 351
V LRS P CG R +V+C +Q ARR+R P
Sbjct: 12 VQLRSHP-CGPPMGRTMVWCLHQDSVQRCAHARRRRRP 48
>07_01_0535 + 3952066-3952986
Length = 306
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -3
Query: 727 IENCQYEDKHQSRQLRPVAHRHQYHQDAPEKILYDLQE*DFKS*ERDEHEGQQDATASCK 548
++ CQYEDK Q + + +QD +KI +E + + E + Q + S K
Sbjct: 126 VQQCQYEDKKVPNQCKDEENTPGQYQDEEQKIAKQCKEEEEEEEENALEKYQDEEHKSLK 185
>04_04_0734 + 27648661-27649596
Length = 311
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 494 PQLGPPPTPAVALRSMPNCGEG 429
P PPP+PA L+ +P C G
Sbjct: 207 PPPNPPPSPATPLQPLPECDGG 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,020,512
Number of Sequences: 37544
Number of extensions: 519369
Number of successful extensions: 1796
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1795
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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