Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00235
(816 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_44358| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23) 29 6.0
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10) 29 6.0
SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 7.9
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 33.5 bits (73), Expect = 0.21
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -1
Query: 435 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITH--PPN*PNKFTITNIVARNLPQ 262
R N +++ + ++ NTT NS P SLP+T H PPN ++ N N
Sbjct: 118 RHNSLTNTTRHNSLNNTTRHNSLPNTTRHNSLPNTTRHNSPPNTTRHNSLPNTTRHNSLH 177
Query: 261 PQACPCSLSALTTGTTC 211
SL TT TTC
Sbjct: 178 NTTRHNSLHN-TTRTTC 193
>SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 561 VASCWPSCSSRS*DLKSHSCRSYKIFSGA 647
VAS W S R +K H C+S ++F G+
Sbjct: 563 VASVWDVVSDRRFGIKQHPCKSARVFKGS 591
>SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +1
Query: 598 KI*NLIPADHTRSSRE---HLDDIGDGGLPDEAVCSDACPRTDSSQSVP*RVVGGASYNR 768
KI + AD T+S+ E DDI D + + V A T S+ + +GG++
Sbjct: 857 KIPTIFYADETKSTEEEEEGNDDIDDDDVSEGMVVQKAREETMGQDSMDEKCIGGSTEEV 916
Query: 769 SETSSN 786
S T+SN
Sbjct: 917 SRTNSN 922
>SB_44358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 420 SHSILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARN 271
+H+ + ++ NTT NS P SLP+T H PN ++TN N
Sbjct: 14 THTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHNSLTNTTRHN 65
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -1
Query: 384 TMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIV-ARNLPQPQACPCSLSALTTGTTCG 208
T+ +TPQ T + P+ TH P P+ T T+ + P P + TT T
Sbjct: 14 TLTKATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPTPAT 73
Query: 207 DRP 199
P
Sbjct: 74 PTP 76
>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
Length = 390
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = -1
Query: 423 TSHSILYANVCNTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPQACPC 244
T H ++A V T+ + A ++LP + T P N P T+ + A++ C
Sbjct: 311 TIHKAVFATV-QITITDINDNAPKFVNLPYSGTVPENSPTGLTVLRVTAQDADSVCTLHC 369
Query: 243 SLSALTTGT-TC 211
L T+ TC
Sbjct: 370 ELKTSTSSVYTC 381
>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
Length = 296
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = -1
Query: 435 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARNLP 265
R N ++ + + NTT NS P SLP+T H PN ++ N N P
Sbjct: 131 RHNSLPNTARHKSPTNTTRHNSLPNITRHNSLPNTARHNSLPNTTRHNSLPNTARHNSP 189
>SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 435 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARNLP 265
R N ++ + ++ NTT NS P SLP+T H PN ++ N N P
Sbjct: 19 RHNSLPNTTRHNSLHNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRYNSLPNTTRHNSP 77
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 435 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITH 322
R N ++ Y ++ NTT NS P SLP+T H
Sbjct: 55 RHNSLPNTTRYNSLPNTTRHNSPPNTTRHNSLPNTTRH 92
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 423 YSSFSAIWH*SERYCWCWRR--PELRAQSVRGVP 518
+ S+ + SE YCWC R EL V+GVP
Sbjct: 2673 FGSYRPVQCDSEGYCWCVERYGNELPRTKVKGVP 2706
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -1
Query: 426 CTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPQACP 247
CT + + +T STP A ST S PST + P T + A + P + P
Sbjct: 79 CTPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTP 138
Query: 246 CSLSALTTGTT 214
+ S +T +T
Sbjct: 139 STPSTPSTPST 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,110,795
Number of Sequences: 59808
Number of extensions: 588492
Number of successful extensions: 1863
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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