Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00235
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y14949-1|CAA75173.1| 277|Caenorhabditis elegans SURF-4 protein ... 113 2e-25
U58728-5|AAB00591.1| 277|Caenorhabditis elegans Surfeit homolog... 113 2e-25
Z81581-7|CAB04659.1| 269|Caenorhabditis elegans Hypothetical pr... 48 8e-06
U21324-9|AAA62560.2| 755|Caenorhabditis elegans Coenzyme q (ubi... 29 4.0
AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical ... 29 4.0
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 28 7.0
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 28 9.2
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 28 9.2
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 28 9.2
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z38112-6|CAA86235.2| 870|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z35637-7|CAA84690.2| 870|Caenorhabditis elegans Hypothetical pr... 28 9.2
U64601-3|ABC71817.1| 485|Caenorhabditis elegans Temporarily ass... 28 9.2
U64601-2|AAQ82847.1| 592|Caenorhabditis elegans Temporarily ass... 28 9.2
U64601-1|AAB04573.2| 564|Caenorhabditis elegans Temporarily ass... 28 9.2
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 28 9.2
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 28 9.2
U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein. 28 9.2
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein. 28 9.2
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 28 9.2
>Y14949-1|CAA75173.1| 277|Caenorhabditis elegans SURF-4 protein
protein.
Length = 277
Score = 113 bits (271), Expect = 2e-25
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 2/169 (1%)
Frame = +2
Query: 254 AWGCGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQF- 430
+W CG F+AT+FVI N FGQ +M++ R KV +ACG+L IV+LQT AY ILWD++F
Sbjct: 65 SWSCGWFIATLFVIYNFFGQFIPVLMIMLRKKVLVACGILASIVILQTIAYHILWDLKFL 124
Query: 431 -XXXXXXXXXXXXXXXXXXXXXXXXCSGRAVARREQTEDVLATRRRILLAFMFITLLRFE 607
+ + + + R+LL FMF++L+ FE
Sbjct: 125 ARNIAVGGGLLLLLAETQEEKASLFAGVPTMGDSNKPKSYMLLAGRVLLIFMFMSLMHFE 184
Query: 608 ISFLQIIQDLLGSILMILVTVGYRTKXXXXXXXXXXXXXXXYHNAWWAV 754
+SF+Q+++ ++G L+ LV++GY+TK + NAWW +
Sbjct: 185 MSFMQVLEIVVGFALITLVSIGYKTKLSAIVLVIWLFGLNLWLNAWWTI 233
Score = 70.5 bits (165), Expect = 1e-12
Identities = 28/52 (53%), Positives = 39/52 (75%)
Frame = +3
Query: 93 NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQWSEQRDYM 248
NE ++ ED A+ RK + LP +ARLCL+STFLEDG+RM+FQW +Q+ +M
Sbjct: 11 NEMLAKREDAAEDFFRKTRTYLPHIARLCLVSTFLEDGIRMYFQWDDQKQFM 62
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 771 RDFLKYDFFQTLSVI 815
RDF+KYDFFQT+SVI
Sbjct: 240 RDFMKYDFFQTMSVI 254
>U58728-5|AAB00591.1| 277|Caenorhabditis elegans Surfeit homolog
protein 4 protein.
Length = 277
Score = 113 bits (271), Expect = 2e-25
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 2/169 (1%)
Frame = +2
Query: 254 AWGCGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQF- 430
+W CG F+AT+FVI N FGQ +M++ R KV +ACG+L IV+LQT AY ILWD++F
Sbjct: 65 SWSCGWFIATLFVIYNFFGQFIPVLMIMLRKKVLVACGILASIVILQTIAYHILWDLKFL 124
Query: 431 -XXXXXXXXXXXXXXXXXXXXXXXXCSGRAVARREQTEDVLATRRRILLAFMFITLLRFE 607
+ + + + R+LL FMF++L+ FE
Sbjct: 125 ARNIAVGGGLLLLLAETQEEKASLFAGVPTMGDSNKPKSYMLLAGRVLLIFMFMSLMHFE 184
Query: 608 ISFLQIIQDLLGSILMILVTVGYRTKXXXXXXXXXXXXXXXYHNAWWAV 754
+SF+Q+++ ++G L+ LV++GY+TK + NAWW +
Sbjct: 185 MSFMQVLEIVVGFALITLVSIGYKTKLSAIVLVIWLFGLNLWLNAWWTI 233
Score = 72.5 bits (170), Expect = 3e-13
Identities = 29/52 (55%), Positives = 40/52 (76%)
Frame = +3
Query: 93 NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQWSEQRDYM 248
NE ++ AED A+ RK + LP +ARLCL+STFLEDG+RM+FQW +Q+ +M
Sbjct: 11 NEMLAKAEDAAEDFFRKTRTYLPHIARLCLVSTFLEDGIRMYFQWDDQKQFM 62
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 771 RDFLKYDFFQTLSVI 815
RDF+KYDFFQT+SVI
Sbjct: 240 RDFMKYDFFQTMSVI 254
>Z81581-7|CAB04659.1| 269|Caenorhabditis elegans Hypothetical
protein T02E1.7 protein.
Length = 269
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +3
Query: 93 NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWF 221
N ++ ED + + R + VLPT+ RL LISTF+EDGLR+ F
Sbjct: 4 NVVITRCEDYTETLARNTRKVLPTIGRLLLISTFVEDGLRLLF 46
>U21324-9|AAA62560.2| 755|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 8 protein.
Length = 755
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 293 IVNLFGQLGGCVMVLGRLKVDIACGVLF 376
I +L +L GC ++ +LK ++CG LF
Sbjct: 709 IYSLHRKLSGCYLLAAKLKATVSCGGLF 736
>AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical
protein W10G11.5 protein.
Length = 345
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = -1
Query: 414 SILYANVCNTTMKNSTPQAISTLSLPSTITHP--PN*PNKFTITNIVARNLPQPQACPCS 241
++ ++ T S P + + LP+T+T P + T T + P+P P
Sbjct: 112 TVTSTHIPTTVTTTSIPTTVPSTQLPTTVTTTPIPTTTTRKTTTTTLRPTKPRPMTKP-R 170
Query: 240 LSALTTGTTCGDRPPGMW 187
+ G +RP G W
Sbjct: 171 VKVCPYGWATFNRPSGKW 188
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -3
Query: 778 KSLSGCRMHRPPRVMVQIENCQYEDKHQSRQLRPVAHRHQYHQDAPEKILYDLQE 614
K L G + PPRVM IE + K SR+ V ++ H+DA E Q+
Sbjct: 1379 KQLKGVKT--PPRVMGLIEQARLGVKQLSRESSLVEPQNSAHEDAFEDAQNSFQD 1431
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 233 AERLHGHAWGCGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIA 361
AER G+ KFL T V++ L + M RLK+D+A
Sbjct: 594 AERTSGYCGADLKFLCTEAVLIGLRSRYPHIYMCSERLKLDVA 636
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 233 AERLHGHAWGCGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIA 361
AER G+ KFL T V++ L + M RLK+D+A
Sbjct: 592 AERTSGYCGADLKFLCTEAVLIGLRSRYPHIYMCSERLKLDVA 634
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 233 AERLHGHAWGCGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIA 361
AER G+ KFL T V++ L + M RLK+D+A
Sbjct: 594 AERTSGYCGADLKFLCTEAVLIGLRSRYPHIYMCSERLKLDVA 636
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 233 AERLHGHAWGCGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIA 361
AER G+ KFL T V++ L + M RLK+D+A
Sbjct: 594 AERTSGYCGADLKFLCTEAVLIGLRSRYPHIYMCSERLKLDVA 636
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 233 AERLHGHAWGCGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIA 361
AER G+ KFL T V++ L + M RLK+D+A
Sbjct: 592 AERTSGYCGADLKFLCTEAVLIGLRSRYPHIYMCSERLKLDVA 634
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 233 AERLHGHAWGCGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIA 361
AER G+ KFL T V++ L + M RLK+D+A
Sbjct: 594 AERTSGYCGADLKFLCTEAVLIGLRSRYPHIYMCSERLKLDVA 636
>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 78 KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 182
K + N ++S ++ D + G +LPTVA+L +
Sbjct: 1295 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 1329
>Z38112-6|CAA86235.2| 870|Caenorhabditis elegans Hypothetical
protein E03A3.6b protein.
Length = 870
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 78 KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 182
K + N ++S ++ D + G +LPTVA+L +
Sbjct: 76 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 110
>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 78 KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 182
K + N ++S ++ D + G +LPTVA+L +
Sbjct: 1295 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 1329
>Z35637-7|CAA84690.2| 870|Caenorhabditis elegans Hypothetical
protein E03A3.6b protein.
Length = 870
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 78 KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 182
K + N ++S ++ D + G +LPTVA+L +
Sbjct: 76 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 110
>U64601-3|ABC71817.1| 485|Caenorhabditis elegans Temporarily
assigned gene nameprotein 126, isoform c protein.
Length = 485
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 215 VVPVVRAERLHGHAWGCGKFL----ATMFVIVNLFGQLGGCVMVLGR 343
V+P+ + LH H W G+FL AT V++ L CV+ L R
Sbjct: 45 VMPMSLLDLLHNHRWPLGRFLCRMWATSDVLLCTASILNLCVISLDR 91
>U64601-2|AAQ82847.1| 592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 126, isoform b protein.
Length = 592
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 215 VVPVVRAERLHGHAWGCGKFL----ATMFVIVNLFGQLGGCVMVLGR 343
V+P+ + LH H W G+FL AT V++ L CV+ L R
Sbjct: 152 VMPMSLLDLLHNHRWPLGRFLCRMWATSDVLLCTASILNLCVISLDR 198
>U64601-1|AAB04573.2| 564|Caenorhabditis elegans Temporarily
assigned gene nameprotein 126, isoform a protein.
Length = 564
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 215 VVPVVRAERLHGHAWGCGKFL----ATMFVIVNLFGQLGGCVMVLGR 343
V+P+ + LH H W G+FL AT V++ L CV+ L R
Sbjct: 124 VMPMSLLDLLHNHRWPLGRFLCRMWATSDVLLCTASILNLCVISLDR 170
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/64 (28%), Positives = 23/64 (35%)
Frame = -1
Query: 387 TTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPQACPCSLSALTTGTTCG 208
+T ST +T P+T T T T+ A PQP S +T T
Sbjct: 605 STTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTSEKPVTLTTQTW 664
Query: 207 DRPP 196
PP
Sbjct: 665 TAPP 668
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/64 (28%), Positives = 23/64 (35%)
Frame = -1
Query: 387 TTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQPQACPCSLSALTTGTTCG 208
+T ST +T P+T T T T+ A PQP S +T T
Sbjct: 605 STTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTSEKPVTLTTQTW 664
Query: 207 DRPP 196
PP
Sbjct: 665 TAPP 668
>U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein.
Length = 293
Score = 27.9 bits (59), Expect = 9.2
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -3
Query: 664 HQYHQDAPEKI-LYDLQE*DFKS*ERDEHEGQQDATASCKYVFGLFSPSDGTPRTDC--A 494
H+ HQ+ +K L D QE KS H+G QD+ S + P D +TD A
Sbjct: 129 HKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQE-------PKDHQDQTDTQEA 181
Query: 493 LSSGLRQHQQ*RSDQCQIAEKE 428
L Q QQ D+ ++ E +
Sbjct: 182 LDHKDHQDQQEMLDKTELQETQ 203
>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
Length = 2084
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 78 KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 182
K + N ++S ++ D + G +LPTVA+L +
Sbjct: 1298 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 1332
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 233 AERLHGHAWGCGKFLATMFVIVNLFGQLGGCVMVLGRLKVDIA 361
AER G+ KFL T V++ L + M RLK+D+A
Sbjct: 594 AERTSGYCGADLKFLCTEAVLIGLRSRYPHIYMCSERLKLDVA 636
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,918,533
Number of Sequences: 27780
Number of extensions: 412959
Number of successful extensions: 1391
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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