Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00235
         (816 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15980.1 68417.m02426 pectinesterase family protein contains ...    31   1.2  
At4g10740.1 68417.m01754 F-box family protein contains Pfam PF00...    29   2.8  
At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloropla...    29   3.7  
At5g06250.1 68418.m00698 DNA-binding protein, putative similar t...    28   6.4  
At1g30650.1 68414.m03748 WRKY family transcription factor contai...    28   6.4  

>At4g15980.1 68417.m02426 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 701

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = +1

Query: 613 IPADHTRSSREHLDDIGDGGLPDEAVCS--DACPRTDSSQSVP*RV-------VGGASYN 765
           IP    RS R  L  +G G   DE+V S  D+ P  DSS   P  V       V  +S N
Sbjct: 208 IPFPFLRSRRGRLGILGSGSSRDESVGSSQDSPPNEDSSDDSPSTVDSSENQPVDSSSEN 267

Query: 766 RSETSSN 786
           +S  SSN
Sbjct: 268 QSSDSSN 274


>At4g10740.1 68417.m01754 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 427

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 136 YEKAKMSYPLWRDCALYPHSWRTVSACGSSGQSRETTW 249
           YE       LW    + PH WR +S CG    +  T W
Sbjct: 188 YETYDFDTDLWTTLDVSPH-WRIISRCGGVSLNGNTYW 224


>At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloroplast,
           putative / O-succinylhomoserine (Thiol)-lyase, putative
           strong similarity to SP|P55217 Cystathionine
           gamma-synthase, chloroplast precursor (EC 4.2.99.9)
           (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis
           thaliana}; contains Pfam profile PF01053: Cys/Met
           metabolism PLP-dependent enzyme
          Length = 412

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 268 QIPRHNVCDSKFIW---SIRRMCYGARKAQSGYRLRRAVLHSCITDIRVQYT 414
           QI + N  + +F+     + R+C G    Q G RLRR +  S IT + V  T
Sbjct: 2   QILKENASNQRFVTRESEVNRICCGFNGFQLGERLRRDMKTSSITTLVVNTT 53


>At5g06250.1 68418.m00698 DNA-binding protein, putative similar to
           DNA-binding proteins from [Arabidopsis thaliana] RAV1
           GI:3868857 and RAV2 GI:3868859, AP2 domain containing
           protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 282

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 127 SATSSAVDTYSLGICIFHAEHSTNTEKRNLTESE 26
           +AT+SAV+T S+G   +H  H+T+      + SE
Sbjct: 167 AATNSAVNTSSMGALSYHQIHATSNYSNPPSHSE 200


>At1g30650.1 68414.m03748 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 430

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 733 VQIENCQYEDKHQSRQLRPVAHRHQYHQDAPEKILYDLQE 614
           +++EN   +D +Q    RP  H HQ HQ  P+    DL+E
Sbjct: 343 MELENVDDDDDNQIAPYRPELHDHQ-HQ--PDDFFADLEE 379


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,747,325
Number of Sequences: 28952
Number of extensions: 379962
Number of successful extensions: 1192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)