Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00234
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   4.0  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   4.0  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   4.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   7.0  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   9.2  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 492 SKHFCSLCTD 521
           SKH CS+C D
Sbjct: 82  SKHLCSICGD 91


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 342 ARIRSFSLKYCLSNKLTCTLIIITVYCCF 428
           ++ R  SL++CL+     T + + +YC +
Sbjct: 310 SKFRPSSLRFCLNILSIFTYVPMILYCVY 338


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 342 ARIRSFSLKYCLSNKLTCTLIIITVYCCF 428
           ++ R  SL++CL+     T + + +YC +
Sbjct: 35  SKFRPSSLRFCLNILSIFTYVPMILYCVY 63


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 635 QTKNCLLLVSKIAILFPCSEKSI 567
           + K  LLL  KI  +FP  +K+I
Sbjct: 277 EVKTTLLLAYKIRQVFPNEKKNI 299


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
          protein protein.
          Length = 242

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 98 YPRIISSFSPPYPT 57
          YPR +  +  PYP+
Sbjct: 3  YPRSVGVYGAPYPS 16


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,953
Number of Sequences: 336
Number of extensions: 3420
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)