Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00234
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   1.9  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    27   3.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   4.3  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   4.3  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   10.0 
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   10.0 

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +1

Query: 418 TVVFYYNRNVSRQMALDP----YNSVAYHPSTFVASVQT*IS 531
           T++FY++ NVS  MA DP         +H   F+  + T +S
Sbjct: 285 TILFYFDHNVSSVMAQDPSFPLTKPAGFHWDFFLLGITTGVS 326


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 242 VCIRLRTRKCLAAKLGIEAHFFKSAYTEKANEGSANKEL 358
           +CIR+R  +CL  +  ++    K  +   A+E   NK+L
Sbjct: 117 LCIRVRLERCLPPRFHVDVKVKKGTH---ASESQVNKQL 152


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 294 RRIF-LNLRILKKLMKEARIRSFSLKYCLSN 383
           +RIF + L+ L+  +K +R  SFSL Y +SN
Sbjct: 363 QRIFEIILKDLETFLKLSRYESFSLHYLMSN 393


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
 Frame = +2

Query: 221 WNIFYQCVCIRL---RTRKCLAAKLGIEAHFFKSAYTEKANEGSANKELLLKILSFK--- 382
           W I   C  ++    +  KC+   + ++  F + AYT + +E SAN+E      SF+   
Sbjct: 434 WCILANCFSLQREHSQALKCINRAIQLDPTF-EYAYTLQGHEHSANEEYEKSKTSFRKAI 492

Query: 383 *VNM-YINYHHGLLLFFIITG 442
            VN+ + N  +GL + ++ TG
Sbjct: 493 RVNVRHYNAWYGLGMVYLKTG 513


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 392 MYINYHHGLLLFFIITGTLADRW 460
           +Y N H G++LF  + G  ++ W
Sbjct: 654 VYQNKHQGIILFDKVYGVFSENW 676


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 623 CLLLVSKIAILFPCSEKSIIVGHGYSKRFTNEI 525
           CL  + K A + P SE  + V  GY  R T+EI
Sbjct: 119 CLTSILKKAKIIPGSEARVFV--GYDSRSTSEI 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,139
Number of Sequences: 5004
Number of extensions: 53377
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)