Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00234
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41748-5|AAA83338.1|  364|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U41748-5|AAA83338.1|  364|Caenorhabditis elegans Hypothetical
           protein C31H2.4 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -1

Query: 661 NVYHKIQIIKQKTVYCWSVRSQFYSRVQRSLL*SVMAIQNDLQM 530
           ++   +QI+K ++V   ++ SQ+Y  ++  L  + + ++ DL+M
Sbjct: 255 DIISAVQIMKSRSVEFLTIPSQYYDNLEERLSKTNLIVKEDLKM 298


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -3

Query: 248 YIHIDKKYSIM*ITNRMSFVNASSNGLIKKYNRTYYNY 135
           Y   + ++S +  +N+  +   ++NGL+K+YN  +Y+Y
Sbjct: 192 YSFSNVRFSNLVCSNQNVYNVFATNGLVKRYNICFYSY 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,659
Number of Sequences: 27780
Number of extensions: 293609
Number of successful extensions: 655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)