Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00233
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    30   0.24 
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    30   0.24 
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   5.1  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    26   5.1  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    26   5.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   8.9  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   8.9  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   8.9  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 229 PLQACSSV*SQCQWSGTNERSAESTPFTYESGWKDACAVFFYSLVC 366
           P QAC +  SQC+++ + +    S  F  E   +  C  +   L+C
Sbjct: 53  PCQACIATPSQCKYADSLKERTPSKQFIAELSQRQKCFEYLMELLC 98


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 492 WY-GVVIYTPGRFHFQHLSALGSYPVHPMSFLLKLWWVVQASYWL 623
           W+ G+ IY    +          YP + MS L K ++++Q  +WL
Sbjct: 169 WFLGLYIYRSSNYWSNEEKLFEDYPQYYMSPLFKAYYLIQLGFWL 213


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 12  KFLSEDFFRANNLYLLVSRLIPTKMGVKPAIGRKTNKNP 128
           KFL E F +  NL+ L + ++    G+ P + R T   P
Sbjct: 175 KFLKEQFSKYANLFFLFTAVVQQIPGITP-VNRYTTIGP 212


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 515 SIDHHPIPESRWNTISCPDSLRALNLDFE 429
           S++ HP+P+    TIS  + LR + ++++
Sbjct: 356 SLNEHPLPKKTLLTISIFEKLRLIRVEYD 384


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 239 LVHQFNHNVSGVEPTRE 289
           L+H   HN +G++PTRE
Sbjct: 184 LLHACAHNPTGIDPTRE 200


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 586 RRKLIGCTG*LPKAERC*K*NLP 518
           R+K + C+G  P  ++C K N+P
Sbjct: 76  RKKKVKCSGERPSCDQCLKHNIP 98


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +3

Query: 513 TPGRFHFQHLSALGSYPVHPMSFLLKLWWVVQASYWL 623
           TP  F F H    G         + K W VV    WL
Sbjct: 419 TPAGFQFSHHFGFGKLDASKFVEVAKDWQVVNPQTWL 455


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 133 MGGFLLVFRPIAGFTPIFVGIN 68
           M GFL++F PI    PIF  +N
Sbjct: 502 MFGFLVMFSPIYPLAPIFSLVN 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,370
Number of Sequences: 5004
Number of extensions: 66250
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)