Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00233
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1028 + 25499354-25499809                                         29   4.0  
06_03_1407 - 29954374-29954738,29955939-29958558                       29   4.0  
02_05_1018 - 33530834-33530926,33531036-33531098,33531193-335312...    29   4.0  
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    28   6.9  
05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933...    27   9.2  
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482...    27   9.2  
01_03_0130 + 12853325-12853948,12854657-12854822,12854907-128551...    27   9.2  

>12_02_1028 + 25499354-25499809
          Length = 151

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 135 FSHEFVIQNHADIVSCVVMVFLVGL 209
           F+HE  I + + + SC+V VF++GL
Sbjct: 75  FAHEDAICHVSIVASCIVRVFIIGL 99


>06_03_1407 - 29954374-29954738,29955939-29958558
          Length = 994

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 221 YKSHCKLVHQFNHNVSGVEPTREAPKAHLLLMNLGG 328
           Y    +L+  +N+N+SG+ P   A  A L  ++LGG
Sbjct: 146 YFPSLELIDAYNNNLSGLLPPFSASHARLRYLHLGG 181


>02_05_1018 -
           33530834-33530926,33531036-33531098,33531193-33531236,
           33531973-33532118,33532262-33532281,33532365-33532500,
           33532585-33532804,33532905-33533085,33533495-33533518,
           33534127-33534341,33534425-33534705,33535987-33536210
          Length = 548

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 298 STPFT-YESGWKDACAVFFYSLVCIVMHAILQEYFLDK 408
           STPFT +E+GW     +  +++VC     +++  F  K
Sbjct: 180 STPFTIHEAGWVGLAVLAMFAIVCCYTGVLMKHCFESK 217


>06_03_0793 +
           24662506-24663512,24664470-24664787,24664996-24665323,
           24665465-24665887,24665960-24666252,24666332-24666605,
           24666856-24667358,24667464-24667785,24667875-24668220,
           24668339-24668997,24669524-24669625,24669656-24670052,
           24670155-24670270,24670360-24670386
          Length = 1704

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 313 YESGWKDACAVFFYSLVCIVMHAILQEYFLDKISKKFHLSK 435
           + SG K+   +FF  L+  V+  +LQ  FL K++    L K
Sbjct: 375 FRSGLKEEIGLFFPMLILRVLENVLQPSFLQKMTVLNFLEK 415


>05_06_0051 -
           25190803-25191216,25191301-25191891,25193248-25193317,
           25193392-25193443,25195368-25195440,25195557-25195646
          Length = 429

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 445 SALNESGQLIVFHLDSGMGW*SILREG 525
           +A++E+   ++FHLDS  G   ++REG
Sbjct: 275 AAISEAAMALLFHLDSIQGGDPMIREG 301


>01_05_0461 +
           22446797-22447050,22447171-22447288,22447895-22448217,
           22448908-22449056,22449324-22449463,22449606-22449757,
           22449862-22450021,22450071-22450088
          Length = 437

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -1

Query: 397 SIPEE*HASQYRQVNRKTRHKHLSTQIHK*KVCFRRFSRWFHSTDIVIKLMNKLAMGLVD 218
           ++P   + S Y Q   +    +LS + H  +V    F    HST     L   L M  +D
Sbjct: 316 NVPMALYMSLYHQRGTEDAMLYLSREAHDGRVKSVLFLMPCHSTPYYSTLHYNLPMRFLD 375

Query: 217 CTINPTRKTI 188
           CT +  + T+
Sbjct: 376 CTPSENKGTL 385


>01_03_0130 +
           12853325-12853948,12854657-12854822,12854907-12855118,
           12855372-12855865,12856228-12856276,12856367-12856690
          Length = 622

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 226 VPLQACSSV*SQCQWSGTNERSAESTPFTYESGWKDACAVFFYSLVCIVM 375
           +PL+ C       +W        ++TP++Y +G      ++ ++L CI M
Sbjct: 474 MPLKICYPAMEDDEWRIITGSDPKNTPWSYHNGGSWPTLLWQFTLACIKM 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,651,632
Number of Sequences: 37544
Number of extensions: 408542
Number of successful extensions: 993
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)