Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00233
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4288| Best HMM Match : DUF1165 (HMM E-Value=2.8)                    48   8e-06
SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)                   31   1.0  
SB_14562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11065| Best HMM Match : WD40 (HMM E-Value=1.7e-35)                  28   5.4  
SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05)                  28   7.1  
SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_4288| Best HMM Match : DUF1165 (HMM E-Value=2.8)
          Length = 162

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +1

Query: 310 TYESGWKDACAVFFYSLVCIVMHAILQEYFLD 405
           +Y +G KD C +FFYS+  IV+HAI+QEY LD
Sbjct: 8   SYTNGPKDFCTIFFYSMAWIVVHAIIQEYILD 39


>SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)
          Length = 576

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
 Frame = +2

Query: 167 RYCFLCCYGFPGWIDGTVYKSHCKLVHQ-FNHNVSGVE--PTREAPKAHLLLMNL---GG 328
           +YCF     F GW+ G   + +    +    HN  G +  P  E   +H +  N+   GG
Sbjct: 259 KYCFTLVEAFCGWLFGESDRGYTNEGYTCLAHNFKGYDSYPILEFMISHAINSNVIFNGG 318

Query: 329 KML---VPCFSIHLSVL*CMLFFRNTSLIKFPR 418
           K++   VP + I L    C L F   +L K P+
Sbjct: 319 KVMYLSVPEYKIKLK---CTLNFFQMALAKLPK 348


>SB_14562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 337 KHLSTQIHK*KVCFRRFSRWFHSTDIV 257
           K + T IH  ++     +RWFH TDI+
Sbjct: 198 KEIVTVIHPGEIIVLDTNRWFHQTDII 224


>SB_11065| Best HMM Match : WD40 (HMM E-Value=1.7e-35)
          Length = 702

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 508 SILREGFIFNISQLWGATQCTQ*ASFSSY 594
           SI  + FIFN+ Q WG     Q A F  +
Sbjct: 22  SISSDEFIFNVEQSWGVASLRQCAGFPGH 50


>SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05)
          Length = 1444

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 372 HNTDK*IEKH---GTSIFPPRFISKRCA 298
           H +DK + +H   G S FPPR +  RCA
Sbjct: 133 HYSDKTVFRHHGSGDSTFPPRPVKSRCA 160


>SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 206 SNQENHNNTRNNICMILNYKFMTEDG 129
           +N  N+NN  NN C+     +++EDG
Sbjct: 236 NNNNNNNNNNNNKCLERTNSWVSEDG 261


>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 569 VHWVAPQS*EMLKMKPSRSIDHHPIPESRWNTISC 465
           VH   P+  E++   P RS+ +H + + +W  +SC
Sbjct: 165 VHCTNPECNEVM---PRRSLQYHLVSKCKWRIVSC 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,445,935
Number of Sequences: 59808
Number of extensions: 475733
Number of successful extensions: 1496
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)