Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00233
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL022716-2|CAA18772.1| 373|Caenorhabditis elegans Hypothetical ... 74 1e-13
AL022716-1|CAA18770.1| 371|Caenorhabditis elegans Hypothetical ... 73 1e-13
U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81143-7|CAB03517.2| 383|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF067945-13|AAC17676.2| 308|Caenorhabditis elegans Serpentine r... 28 4.7
AF039053-17|AAC25882.2| 279|Caenorhabditis elegans Serpentine r... 28 4.7
AF016684-12|AAB66204.1| 291|Caenorhabditis elegans Hypothetical... 28 4.7
AF000191-4|AAB52881.2| 362|Caenorhabditis elegans Hypothetical ... 28 4.7
U41996-8|AAA83477.1| 310|Caenorhabditis elegans Hypothetical pr... 28 6.2
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 28 6.2
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 28 6.2
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 28 6.2
Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical pr... 27 8.2
>AL022716-2|CAA18772.1| 373|Caenorhabditis elegans Hypothetical
protein C24F3.1b protein.
Length = 373
Score = 73.7 bits (173), Expect = 1e-13
Identities = 66/191 (34%), Positives = 91/191 (47%), Gaps = 13/191 (6%)
Frame = +3
Query: 90 VKPAIGRKTNKNP--PIFSHEFVIQNHADIVSCVVMVFLVGLMVQSTSPIASLFISLI-- 257
VKP G K +K P PI SHEF+IQNH DI+SCVVMVF+VGLM T ++SLFI+
Sbjct: 2 VKPQGGSKASKKPQPPILSHEFIIQNHGDIMSCVVMVFIVGLMFPLTHSLSSLFIAPQYN 61
Query: 258 -TMSVEWNQREKRRKHTFYL*IWVERCLCRVFLFT-C-LYCDACYS----SGILP**NFQ 416
T +V Q ++R H + I L +F ++ C + A I +
Sbjct: 62 GTYTVAVEQGQEREVHGYLSGI---LDLPAIFFYSVCWIVVHAVVQEYGLDKISKKTHLS 118
Query: 417 EVPPLKIKVKCSQ*IWTTYSIPSRLWYGVVIYTPGRFHFQHLSALGSYPV--HPMSFLLK 590
+V K Q +T YSI + +Y V + S YP MS K
Sbjct: 119 KVSTFKFGESFHQMFFTVYSI-AHAFYIVSERLEDFSEVKSFSVWLGYPTEHRVMSAAYK 177
Query: 591 LWWVVQASYWL 623
L+++ Q SYW+
Sbjct: 178 LYFIFQISYWI 188
Score = 59.7 bits (138), Expect = 2e-09
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Frame = +1
Query: 220 LQVPL-QACSSV*SQCQWSGTN----ERSAESTPFTYESGWKDACAVFFYSLVCIVMHAI 384
L PL + SS+ Q++GT E+ E Y SG D A+FFYS+ IV+HA+
Sbjct: 43 LMFPLTHSLSSLFIAPQYNGTYTVAVEQGQEREVHGYLSGILDLPAIFFYSVCWIVVHAV 102
Query: 385 LQEYFLDKISKKFHLSKSRLSALNESGQLIVF 480
+QEY LDKISKK HLSK ES + F
Sbjct: 103 VQEYGLDKISKKTHLSKVSTFKFGESFHQMFF 134
>AL022716-1|CAA18770.1| 371|Caenorhabditis elegans Hypothetical
protein C24F3.1a protein.
Length = 371
Score = 73.3 bits (172), Expect = 1e-13
Identities = 40/78 (51%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Frame = +3
Query: 90 VKPAIGRKTNKNP--PIFSHEFVIQNHADIVSCVVMVFLVGLMVQSTSPIASLFISLI-- 257
VKP G K +K P PI SHEF+IQNH DI+SCVVMVF+VGLM T ++SLFI+
Sbjct: 2 VKPQGGSKASKKPQPPILSHEFIIQNHGDIMSCVVMVFIVGLMFPLTHSLSSLFIAPQYN 61
Query: 258 -TMSVEWNQREKRRKHTF 308
T +V Q ++R H +
Sbjct: 62 GTYTVAVEQGQEREVHGY 79
Score = 59.7 bits (138), Expect = 2e-09
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Frame = +1
Query: 220 LQVPL-QACSSV*SQCQWSGTN----ERSAESTPFTYESGWKDACAVFFYSLVCIVMHAI 384
L PL + SS+ Q++GT E+ E Y SG D A+FFYS+ IV+HA+
Sbjct: 43 LMFPLTHSLSSLFIAPQYNGTYTVAVEQGQEREVHGYLSGILDLPAIFFYSVCWIVVHAV 102
Query: 385 LQEYFLDKISKKFHLSKSRLSALNESGQLIVF 480
+QEY LDKISKK HLSK ES + F
Sbjct: 103 VQEYGLDKISKKTHLSKVSTFKFGESFHQMFF 134
>U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical
protein C30B5.5 protein.
Length = 790
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 277 TNERSAESTPFTYESGWKDACAVFFYSLVCIVMHAILQEYFLDKISKKFHLSKSR-LSAL 453
T ++S E P E K A+ + C+V+ IL YFL K S+K H K + L
Sbjct: 711 TFKKSREQPPQYLELRQKVFIALCL--VFCVVIAWILSCYFLKKHSQKLHQKKQKALEGF 768
Query: 454 NESGQLIVFHLDSGM 498
ES L L + +
Sbjct: 769 YESNNLADIKLQADL 783
>Z81143-7|CAB03517.2| 383|Caenorhabditis elegans Hypothetical
protein ZK265.5 protein.
Length = 383
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 201 VGLMVQSTSPIASLFISLITMSVEWN----QREKRRKHTFYL*IWVERCLCRVFLFTCLY 368
+G++VQ+ I S +LI +S R +R L +W E +CRV L+ Y
Sbjct: 35 IGVLVQAVLFIISFIFTLIGVSTAMRFTIFHRNQRNIFISLLLLWFELLVCRVLLWAFKY 94
>AF067945-13|AAC17676.2| 308|Caenorhabditis elegans Serpentine
receptor, class x protein59 protein.
Length = 308
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 301 TPFTYESGWKDACAVFFYSLVCIVMHAILQEYFLDKISKKFHLS 432
TP GW +F +VCIV+ I + + I+KK H S
Sbjct: 161 TPLCNTIGWYADFCKYFTIIVCIVLIDIATLWKVRSINKKVHTS 204
>AF039053-17|AAC25882.2| 279|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 16 protein.
Length = 279
Score = 28.3 bits (60), Expect = 4.7
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 16/91 (17%)
Frame = +1
Query: 331 DACAVFFYSL------VCIVMHAILQE---YFLDKIS-KKFHLSKSRLSALNESGQLIVF 480
+AC +YS+ + VM AIL +FL+K S ++ LSK+ L AL ++ +I+F
Sbjct: 163 NACFNKYYSINKGTAYILTVMFAILLSTKLFFLNKDSTEQKTLSKANLLALIDAANVIIF 222
Query: 481 HLDSGM------GW*SILREGFIFNISQLWG 555
H + W + G I +S++WG
Sbjct: 223 HFSPILFAFLFKHWFTAQNIGPIGVVSKMWG 253
>AF016684-12|AAB66204.1| 291|Caenorhabditis elegans Hypothetical
protein F45C12.4 protein.
Length = 291
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 289 FSRWFHSTDIVIKLMNKLAMGLVDCTINPTRKTITTQETIS 167
FSR HS DI I+ + GL+ I+P ET+S
Sbjct: 162 FSREAHSKDIPIEGVTYFEFGLLISCIHPDHTVFPNDETVS 202
>AF000191-4|AAB52881.2| 362|Caenorhabditis elegans Hypothetical
protein T23C6.5 protein.
Length = 362
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 343 VFFYSLVCIVMHAILQEYFLDKISKKFHLSKSRLSALNESGQL 471
+FF + V ++A L F I + FHL K R S + +S ++
Sbjct: 301 LFFNAAVDPFLYAFLSTRFRQSIKETFHLGKVRESNIEQSSRV 343
>U41996-8|AAA83477.1| 310|Caenorhabditis elegans Hypothetical
protein F38E1.3 protein.
Length = 310
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 265 QWSGTNERSAESTPFTYESGWKDACAVFFYSLVCIVM 375
++ GT + ++ S E GWKD C +FY L+ +++
Sbjct: 193 RFKGTLKFASLSCHKGIEMGWKDDCESWFYMLLDLIV 229
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 246 ISLITMSVEWNQREKRRKHTFYL*IWVERCLCRV-FLFTCL 365
++ T+ + WN E++ + TF L + V +C + F CL
Sbjct: 1264 VNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTLECL 1304
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 246 ISLITMSVEWNQREKRRKHTFYL*IWVERCLCRV-FLFTCL 365
++ T+ + WN E++ + TF L + V +C + F CL
Sbjct: 1242 VNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTLECL 1282
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 246 ISLITMSVEWNQREKRRKHTFYL*IWVERCLCRV-FLFTCL 365
++ T+ + WN E++ + TF L + V +C + F CL
Sbjct: 1264 VNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTLECL 1304
>Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical protein
K09C8.5 protein.
Length = 1328
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 352 RKTRHKHLSTQIHK*KVCFRRFSRWFHSTDIVIKLM 245
RK RH H H + RW HS DI ++ M
Sbjct: 1275 RKRRHHHSKKSCHDKGKRRKSGDRWNHSNDICVECM 1310
>Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical protein
K09C8.5 protein.
Length = 1328
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 352 RKTRHKHLSTQIHK*KVCFRRFSRWFHSTDIVIKLM 245
RK RH H H + RW HS DI ++ M
Sbjct: 1275 RKRRHHHSKKSCHDKGKRRKSGDRWNHSNDICVECM 1310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,764
Number of Sequences: 27780
Number of extensions: 369166
Number of successful extensions: 973
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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