Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00233
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 307 FTYESGWKDACAVFFYSLVCIVMHAILQEYF 399
           + + S  +D C +    LVC ++ +IL  +F
Sbjct: 352 YVFRSALEDYCNIVATHLVCGILGSILVPFF 382



 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 322 GWKDACAVFFYSLVCIVMH 378
           GW+  C +   +LV I+M+
Sbjct: 398 GWQMICLIVVIALVSIIMY 416


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 203 NQENHNNTRNNICMILNYKFM 141
           N  N+NN  NN C  L Y  +
Sbjct: 339 NNNNYNNNYNNNCKKLYYNII 359


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 215 YHQSNQENHNNTRNN 171
           Y  SN  N+NN  NN
Sbjct: 322 YKYSNYNNYNNYNNN 336


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 224 KSHCKLVHQFNHNVSGVEPT 283
           + H  +++Q+N N+   EPT
Sbjct: 357 EKHAAMLYQYNFNIIISEPT 376


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -3

Query: 248 DEQACNGTCRLYHQSNQENHNNTRNN 171
           D+   N  C  YH  N  N N    N
Sbjct: 411 DDLMRNTRCGRYHNQNAGNQNADNQN 436


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 218 LYHQSNQENHNNTRNNICMILNYKFMTEDGRVFVS 114
           +YH S+   H  T N       +  MT DG  + +
Sbjct: 215 VYHNSDDSFHRLTSNTFDYDPKFTKMTIDGESYTA 249


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 243 TSLQWDL*TVPSIQPGK 193
           TS++WD+  VP+++  K
Sbjct: 202 TSVEWDILEVPAVRNEK 218


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 494 VWGGDLYSGKVSFSTSL 544
           +W G  ++GKV + TSL
Sbjct: 224 IWKGVKWTGKVVYFTSL 240


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 494 VWGGDLYSGKVSFSTSL 544
           +W G  ++GKV + TSL
Sbjct: 277 IWKGVKWTGKVVYFTSL 293


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 106 PIAGFTPIFVGINL 65
           P  G T +F+G+NL
Sbjct: 71  PARGLTAVFLGLNL 84


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 218 LYHQSNQENHNNTRNNICMILNYKFMTEDGRVFVS 114
           +YH S+   H  T N       +  MT DG  + +
Sbjct: 215 VYHNSDDSFHRLTSNTFDYDPKFTKMTIDGESYTA 249


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 218 LYHQSNQENHNNTRNNICMILNYKFMTEDGRVFVS 114
           +YH S+   H  T N       +  MT DG  + +
Sbjct: 215 VYHNSDDSFHRLTSNTFDYDPKFTKMTIDGESYTA 249


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 212 HQSNQENHNNTRNN 171
           H +N  N+NN  NN
Sbjct: 324 HNNNNYNNNNYNNN 337


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 223 QVPLQACSSV*SQCQWSGTNERSAESTP 306
           QVPL + S+V +      TN  + +S+P
Sbjct: 529 QVPLTSSSNVNNNSGNGNTNSSARDSSP 556


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 239 ACNGTCRLYHQSNQENHNNTRNN 171
           A N      + +N  N+NN  NN
Sbjct: 230 AGNANTNASNNNNNNNNNNNNNN 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,625
Number of Sequences: 438
Number of extensions: 4671
Number of successful extensions: 21
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)