Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00233
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24280.1 68415.m02901 serine carboxypeptidase S28 family prot...    30   1.1  
At1g11960.1 68414.m01382 early-responsive to dehydration protein...    30   1.4  
At4g13810.1 68417.m02140 disease resistance family protein / LRR...    29   1.9  
At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At5g39865.1 68418.m04835 glutaredoxin family protein                   29   3.3  
At4g38200.1 68417.m05392 guanine nucleotide exchange family prot...    29   3.3  
At3g05820.1 68416.m00653 beta-fructofuranosidase, putative / inv...    28   4.4  
At2g04515.1 68415.m00457 expressed protein                             28   4.4  
At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family...    28   4.4  
At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family...    28   4.4  
At4g38370.1 68417.m05425 phosphoglycerate/bisphosphoglycerate mu...    28   5.8  
At3g06500.1 68416.m00754 beta-fructofuranosidase, putative / inv...    28   5.8  
At5g67200.1 68418.m08471 leucine-rich repeat transmembrane prote...    27   7.7  
At4g19960.1 68417.m02923 potassium transporter family protein si...    27   7.7  
At2g41190.1 68415.m05087 amino acid transporter family protein l...    27   7.7  

>At2g24280.1 68415.m02901 serine carboxypeptidase S28 family protein
           contains Pfam profile: PF05577 Serine carboxypeptidase
           S28
          Length = 494

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 333 CLCRVFLFTCLYCDACYSSGILP**NFQEVPPLKIKVKCSQ 455
           CLC VFLF  +  +A YS G      F  +  L++K K S+
Sbjct: 4   CLCLVFLFFSIVAEATYSPG-----GFHHLSSLRLKKKVSK 39


>At1g11960.1 68414.m01382 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein [Arabidopsis thaliana] GI:15375406
          Length = 375

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -2

Query: 429 EVELLGNFIKEVFLKNSMHHNTDK*IEKHGTSIFPPRFISKRCAFGASLVGST 271
           +V+ + ++I E+   N       K ++K  TS+ P  F+S +  +GA++   T
Sbjct: 286 KVDAIDHYIAEIEKLNEQIMEERKKVKKDDTSVMPAAFVSFKTRWGAAVSAQT 338


>At4g13810.1 68417.m02140 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 741

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +2

Query: 146 ICNSKSCRYCFLCCYGFPGWIDGTVYKSHCKLVHQFNHNVSGVEPTREAPKAHLLLMNLG 325
           IC   + R   L    F G I       H  ++H  N+N+SG+ P  EA   HL   ++G
Sbjct: 368 ICELDNLRILVLSNNNFSGSIPRCFENLHLYVLHLRNNNLSGIFP-EEAISHHLQSFDVG 426


>At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 322 GWKDACAVFFYSLVCIVMHAILQE--YFLDKISKK 420
           GW D  A +  +LVC+ +H +++    F DK+ KK
Sbjct: 705 GWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKK 739


>At5g39865.1 68418.m04835 glutaredoxin family protein
          Length = 390

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 242 QACNGTCRLYHQSNQENHNNT 180
           + C+G+C+LYH+  +E+   T
Sbjct: 347 ETCSGSCKLYHEGEEEDEGVT 367


>At4g38200.1 68417.m05392 guanine nucleotide exchange family protein
           similar to Brefeldin A-inhibited guanine
           nucleotide-exchange protein 2 [Homo sapiens] SP|Q9Y6D5;
           contains Pfam profile PF01369: Sec7 domain
          Length = 1698

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 313 YESGWKDACAVFFYSLVCIVMHAILQEYFLDKIS 414
           Y SG K    +FF  LV  V+  +LQ  F+ K++
Sbjct: 377 YRSGMKSEVGIFFPMLVLRVLENVLQPSFVQKMT 410


>At3g05820.1 68416.m00653 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 633

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 226 VPLQACSSV*SQCQWSGTNERSAESTPFTYESGWKDACAVFFYSLVCIVM 375
           +PL+ C       +W        ++TP++Y +G      ++ ++L CI M
Sbjct: 484 MPLKICYPALESSEWHIITGSDPKNTPWSYHNGGSWPTLLWQFTLACIKM 533


>At2g04515.1 68415.m00457 expressed protein
          Length = 196

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 119 QKPSHLQS*ICNSKSCRYCFLCCYGFPGWIDGTVYKSHCKLVHQFNHNVSGVEPTRE 289
           Q+  HL +   N    +Y FL C G  G+I G+ + +   L H    N+  VE T+E
Sbjct: 40  QQRLHLLAMYSNLVDKKYMFLLCNGIVGFILGSFHGNSDSLSHGKAINI--VEQTKE 94


>At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 349

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 457 H*EHLTLILRGGTSWKFYQGSI 392
           H E +T+ L GG SW FYQG +
Sbjct: 26  HVEDITIELEGGASW-FYQGMV 46


>At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 488

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 457 H*EHLTLILRGGTSWKFYQGSI 392
           H E +T+ L GG SW FYQG +
Sbjct: 165 HVEDITIELEGGASW-FYQGMV 185


>At4g38370.1 68417.m05425 phosphoglycerate/bisphosphoglycerate
           mutase family protein contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 225

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 337 KHLSTQIHK*KVCFRRFSRWFHSTDIVIKLMN 242
           K  + ++ K ++C+  FSR  H+  +V K++N
Sbjct: 62  KESNIELDKVRICYSPFSRTTHTARVVAKVLN 93


>At3g06500.1 68416.m00754 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 664

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 226 VPLQACSSV*SQCQWSGTNERSAESTPFTYESGWKDACAVFFYSLVCIVM 375
           +PL+ C     + +W        ++TP++Y +G      ++ ++L CI M
Sbjct: 516 MPLKICFPALEKDEWRIITGSDPKNTPWSYHNGGSWPTLLWQFTLACIKM 565


>At5g67200.1 68418.m08471 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 669

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 515 SIDHHPIPESRWNTISCPDSLRALNLDFERWN 420
           SI H+    S  + I+  D L +LNLDF R+N
Sbjct: 150 SISHNNFSGSIPSEINALDRLTSLNLDFNRFN 181


>At4g19960.1 68417.m02923 potassium transporter family protein
           similar to potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 842

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 233 NGTCRLYHQSNQENHNNTRNNICMILNYKFMTED 132
           + T  L H +N  NHNN  +    +++Y   T D
Sbjct: 713 DSTVDLIHNNNNHNHNNNMDMFSSMVDYTVSTLD 746


>At2g41190.1 68415.m05087 amino acid transporter family protein low
           similarity to vesicular GABA transporter [Rattus
           norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 536

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 298 STPFTY-ESGWKDACAVFFYSLVCIVMHAILQEYFLDK 408
           STP+T  E+GW     +  ++++C     ++++ F +K
Sbjct: 167 STPYTVKEAGWASMVILLLFAVICCYTATLMKDCFENK 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,319,874
Number of Sequences: 28952
Number of extensions: 345151
Number of successful extensions: 945
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)