Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00232
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    52   7e-08
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    26   5.1  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.1  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   5.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   5.1  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   6.8  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   6.8  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +3

Query: 510 LHVCHNDILVVDVVHR-APAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFR 686
           L V + D +++ + +  A     S+H  G  QK TP+MDG P  TQC  P   TF Y + 
Sbjct: 60  LVVDYGDQVIIKMTNSLANNRTTSLHSHGLFQKFTPYMDGVPQSTQCEIPPGATFYYNYT 119

Query: 687 ASAVGTHMYHAH 722
           A   GT+  H+H
Sbjct: 120 ALQNGTYWVHSH 131


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 507 KLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKET 611
           K  +  ++I  V   H   ++A+ I WRG PQ E+
Sbjct: 490 KGRILTSNITTVVPNHHMGSYAIQIFWRGDPQHES 524


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 179 ARCASAETKLHAHVLTKDISACYY 250
           + C++   +L AH+++ D S  YY
Sbjct: 151 SNCSNIRRRLTAHIISSDASTAYY 174


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 443 WTDTLLFHLYQYNCHK 396
           + D LL HLY  NCH+
Sbjct: 126 YADLLLLHLYLLNCHE 141


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 458 LRIYTWTDTLLFHLYQYNCHK 396
           LR++TW D  L + Y Y  H+
Sbjct: 260 LRLWTWNDKTLTNTYTYTGHR 280


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 88   YMAKPFKKSCERACKVGQRCRARRR 14
            ++ K F+++C++A    QR RAR R
Sbjct: 1567 HLLKQFEQACQQALSSSQRTRARLR 1591


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 528 DILVVDVVHRAPAHALSI-HWRGQPQKETPFMDGAPMLTQCPQPAYTTFQY 677
           D+ + D+  RA   A  I +  GQP  ETP  +   +L    QP+   F +
Sbjct: 493 DVKIGDIKVRACLFAFDILYLNGQPLLETPLNERRKLLYSMFQPSTGDFTF 543


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 404 NCTDKDGTGECPSTCISADGRERGVLTATVLYPHQASCLSQRY 532
           N T+     + P+T  SA  +    +T  + YPH +S LS  Y
Sbjct: 406 NATNPQSILQRPATTSSAVPQLPKSVTPGLAYPHDSSMLSSNY 448


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 208 TCSCPYKGY*CLLLYSMRSNCSALHTDA*RIL 303
           T   P   Y CL+  SMR  C  +H    R L
Sbjct: 11  TVKKPRSRYGCLICRSMRKKCDEVHPQCGRCL 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,954
Number of Sequences: 5004
Number of extensions: 74582
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)