Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00232
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40114| Best HMM Match : Cu-oxidase_3 (HMM E-Value=0) 66 2e-11
SB_39875| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_53046| Best HMM Match : Cu-oxidase_3 (HMM E-Value=2.8e-31) 64 2e-10
SB_15152| Best HMM Match : CO_deh_flav_C (HMM E-Value=3.7e-09) 32 0.44
SB_37506| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) 29 3.1
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027) 29 3.1
SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7) 29 4.1
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 29 4.1
SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07) 29 5.4
SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_10051| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 28 9.5
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 28 9.5
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 28 9.5
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 28 9.5
>SB_40114| Best HMM Match : Cu-oxidase_3 (HMM E-Value=0)
Length = 220
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/83 (38%), Positives = 43/83 (51%)
Frame = +3
Query: 474 VFSQQPCFTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQ 653
+F+ F L V +VV VV+ A S+H+ G P+MDG P L+QCP
Sbjct: 121 IFTINDKFPGPTLEVMEGAEVVVTVVNEMSTEATSLHFHGIHMTNNPWMDGVPYLSQCPI 180
Query: 654 PAYTTFQYKFRASAVGTHMYHAH 722
+FQY+F A GTH YH+H
Sbjct: 181 LPRQSFQYRFVAEPAGTHWYHSH 203
>SB_39875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 64.1 bits (149), Expect = 1e-10
Identities = 28/76 (36%), Positives = 40/76 (52%)
Frame = +3
Query: 495 FTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQ 674
F + V +VV VV+ ++IHW G + P+MDG ++QCP +FQ
Sbjct: 106 FPGPTIEVTEGAEVVVTVVNHLLKEGVTIHWHGVHMRSNPWMDGVAYISQCPIQVKQSFQ 165
Query: 675 YKFRASAVGTHMYHAH 722
Y+F A GTH YH+H
Sbjct: 166 YRFIADPPGTHWYHSH 181
>SB_53046| Best HMM Match : Cu-oxidase_3 (HMM E-Value=2.8e-31)
Length = 570
Score = 63.7 bits (148), Expect = 2e-10
Identities = 26/63 (41%), Positives = 37/63 (58%)
Frame = +3
Query: 534 LVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFRASAVGTHMY 713
+VV VV+ ++IHW G + P+MDG ++QCP +FQY+F A GTH Y
Sbjct: 1 VVVTVVNHLLKEGVTIHWHGVHMRSNPWMDGVAYISQCPIQVKQSFQYRFIADPPGTHWY 60
Query: 714 HAH 722
H+H
Sbjct: 61 HSH 63
>SB_15152| Best HMM Match : CO_deh_flav_C (HMM E-Value=3.7e-09)
Length = 312
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +3
Query: 450 YPQTDGSEVFSQQPCFTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGA 629
YP+TD +++ +PC+ ++ D V+ ++ AHAL H + P +
Sbjct: 241 YPKTDAAKMVQAKPCYVEDRVTA---DACVIKMLRSPHAHALITHLDVSKAEALPGVVHV 297
Query: 630 PMLTQCPQPAYT 665
CP YT
Sbjct: 298 ITHLNCPDIYYT 309
>SB_37506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 31.9 bits (69), Expect = 0.58
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 666 TFQYKFRASAVGTHMYHAH 722
+FQY+F A GTH YH+H
Sbjct: 2 SFQYRFVAEPAGTHWYHSH 20
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -2
Query: 582 G*ITHEPELYALHRLRGYRCDKHEAWCG*STVAVRTPRSRPSADIHVDGHS 430
G T+ P Y RG+ + EA CG + +R P DIH+ S
Sbjct: 4453 GVCTNTPTSYTCTCARGFHGRRCEAGCGFRELGIRVPNEYRVPDIHMSSSS 4503
>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
Length = 927
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 474 PRSRPSADIHVDGHSPVPSLSVQLPQD 394
PRSRPS + HSP+PSL D
Sbjct: 499 PRSRPSTKMDQVNHSPLPSLGPNTTMD 525
>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
Length = 2261
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 525 CDKHEAWCG*STVAVRTPRSRPSADIHVDGHSPVP 421
CD+H A G +T V +SR IH D H P
Sbjct: 1992 CDEHHASPGNATGTVTMTKSRTDTKIHCDEHHASP 2026
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 525 CDKHEAWCG*STVAVRTPRSRPSADIHVDGHSPVP 421
CD+H A G +T V +SR IH D H P
Sbjct: 2019 CDEHHASPGNATGTVTMTKSRTDTKIHCDEHHASP 2053
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 525 CDKHEAWCG*STVAVRTPRSRPSADIHVDGHSPVP 421
CD+H A G +T V +SR IH D H P
Sbjct: 1965 CDEHHASPGNATGTVTMTKSRIDTKIHCDEHHASP 1999
>SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)
Length = 2372
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 362 LVIEVYKTLSKSCGNCTDKDGTGECPSTCISADGR 466
L + LS S GN +D + G C + I +DGR
Sbjct: 1094 LTLSTLSFLSSSSGNMSDIESDGRCNMSDIESDGR 1128
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +2
Query: 377 YKTLSKSCG-NCTDKDGTGECPSTCISADGRERGVLTATVLYPHQASC 517
YKT C + TD GEC + C++ G T PH C
Sbjct: 664 YKTFGPRCSRDATDWYNLGECDAPCVNNPCHNGGTCTPDGDDPHDYDC 711
>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 28.7 bits (61), Expect = 5.4
Identities = 29/121 (23%), Positives = 48/121 (39%)
Frame = -3
Query: 680 FILKCGICRLRALCQHWGSVHKRRFLLWLTAPXXXXXXXXXXMHYIDYEDIVVTNMKLGA 501
F L C + R L H + + + L LTA H + ++V +M
Sbjct: 332 FCLDCDVFLERRLVVHEIDISAKAYALNLTA-------LIGASHDRILKSLLVHHMTRDR 384
Query: 500 GKARLL*EHLAPVRLRIYTWTDTLLFHLYQYNCHKIC*EFCRLRLLVSHDKSLASLIHDI 321
L H+ VR +++W + + YN EFC L V+ K++ SL+ +
Sbjct: 385 ILGLSLVHHMTRVRAYLFSWVRAIEYKQLVYNQKNFLPEFC---LFVTSPKTVGSLLLVV 441
Query: 320 L 318
L
Sbjct: 442 L 442
>SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)
Length = 653
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 151 ILYLI*LACNESLFTCLNDVRYMAKPFKKSCERAC 47
IL+L+ L C + T L D +YM + + ERAC
Sbjct: 328 ILHLVALMCEKLGPTILQDPKYMLSFIRATLERAC 362
>SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 405 IVLIKMEQESVRPRVYPQTDGSEVFSQQPCFTRTKLHVCHNDILVVDVVHRAPAHALSIH 584
+ LIKM +E + RV DGSE + F +H +++L++ A H H
Sbjct: 107 VELIKMSEEPKKSRVVIAVDGSEHSDRAFDFYSKSMHRKDDEVLLIHANDFADRHTQEHH 166
>SB_10051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 90 RTSFKHVNSDSLHAS*IKYKMEPPKTAMEVHGVPVQKPNYML 215
+ +FK ++S+S+ + EPP ++H V V K + +
Sbjct: 126 KENFKRISSESIQGRQLAVHSEPPNPLQDIHCVDVVKGEFQV 167
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +2
Query: 305 ENCDRECHELDWPMICRVKLVIEVYKTLSKSCGNCTDKDG-TGE-CPSTCISADG 463
ENCD C + W + C+ + T S G C G TG+ C C G
Sbjct: 127 ENCDITCSQGRWGVGCQGTCDCKNNATCSPFTGQCNCTSGFTGDRCEKQCAGDSG 181
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -2
Query: 582 G*ITHEPELYALHRLRGYRCDKHEAWCG*STVAVRTPRSRPSADIHVDGHS 430
G T+ P Y RG+ + E CG + +R P DIH+ S
Sbjct: 2669 GVCTNTPTSYTCTCARGFHGLRCEGGCGFRELGIRVPNEYRVPDIHMSSSS 2719
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 130 QVKLNIKWSRRKPRWKCTVCQCRNQ-ITCSCPYK 228
QV + SR++ RW C Q +NQ + C P K
Sbjct: 46 QVVMCYLHSRQRTRWSCVTYQAKNQAVECYLPGK 79
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 236 SACYYIPCVLIVVRYTPMPEEYFENCDRECHELDWPMICRVKLV-IEVYKTLSKSCGN 406
S CY CVL++V + C C L + V++V ++V LS +CG+
Sbjct: 1963 SKCYVWKCVLVLVLRVEVRARLSVTCGSACSCLCCVNVVLVRMVRVDVRIRLSVTCGS 2020
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,587,539
Number of Sequences: 59808
Number of extensions: 629120
Number of successful extensions: 1693
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1692
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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