Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00232
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54271-3|CAA91039.1| 713|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical pr... 29 2.7
U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbona... 28 6.3
U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbona... 28 6.3
AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion transpo... 28 6.3
AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion transpo... 28 6.3
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 28 8.4
>Z54271-3|CAA91039.1| 713|Caenorhabditis elegans Hypothetical
protein F21D5.3 protein.
Length = 713
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 570 ALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFRASAVGTHMYHAH 722
+++IH G + +MDG + QCP + F+Y+F A GTH YH H
Sbjct: 118 SMTIHVHGIDKHGMWYMDGVAFVQQCPIQSTNKFEYRFIADNKGTHWYHGH 168
>Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical
protein F09F3.2 protein.
Length = 323
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 442 HVYIRRRTGARCSHSNRALPAPSFMFVTTISS*S---M*CIELRLMRYLSIGAVNHKRKR 612
+++I G C ++ P+F+FVTT + S M + L + + S+G V KR+R
Sbjct: 167 NIFIWTGKGTLCEEY-ASIYVPAFIFVTTAITNSINIMTAVRLFMEKLTSLGVVESKRRR 225
Query: 613 LLW 621
W
Sbjct: 226 KRW 228
>Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical
protein Y69H2.2 protein.
Length = 907
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 178 CTVCQCRNQITCSCPYKGY*CLLLYSMR-SNCSAL 279
CT C+ TC+ +KGY C L + +NCS +
Sbjct: 465 CTPDPCKYNSTCTPKFKGYDCTCLTGLTGANCSEI 499
>U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform b protein.
Length = 883
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 99 FKHVNSDSLHAS*IKYKMEPPK--TAMEVHGVPVQKPNYMLMSLQRILVLVIIFH 257
F H+ + +KY +E T EV + +PN L+ L ++V + IFH
Sbjct: 577 FIHLQEEHNSIENLKYYIENAANCTVTEVKDCALSRPNTFLLQLIMVVVSIAIFH 631
>U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform a protein.
Length = 956
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 99 FKHVNSDSLHAS*IKYKMEPPK--TAMEVHGVPVQKPNYMLMSLQRILVLVIIFH 257
F H+ + +KY +E T EV + +PN L+ L ++V + IFH
Sbjct: 577 FIHLQEEHNSIENLKYYIENAANCTVTEVKDCALSRPNTFLLQLIMVVVSIAIFH 631
>AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion
transporter ABTS-4b protein.
Length = 936
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 99 FKHVNSDSLHAS*IKYKMEPPK--TAMEVHGVPVQKPNYMLMSLQRILVLVIIFH 257
F H+ + +KY +E T EV + +PN L+ L ++V + IFH
Sbjct: 577 FIHLQEEHNSIENLKYYIENAANCTVTEVKDCALSRPNTFLLQLIMVVVSIAIFH 631
>AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion
transporter ABTS-4a protein.
Length = 956
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 99 FKHVNSDSLHAS*IKYKMEPPK--TAMEVHGVPVQKPNYMLMSLQRILVLVIIFH 257
F H+ + +KY +E T EV + +PN L+ L ++V + IFH
Sbjct: 577 FIHLQEEHNSIENLKYYIENAANCTVTEVKDCALSRPNTFLLQLIMVVVSIAIFH 631
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical protein
C38C10.5b protein.
Length = 1374
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 290 PEEYFENCDRECHELDWPMICRVKLVIEVYKTLSKSCGNCTDKDGTGECP 439
PE++ ++ D E+D M + ++ + T+ K+C + D +G CP
Sbjct: 925 PEQFMDSLDERPEEIDPRMAITSQPILMSHDTIIKAC-DFKDTEGRITCP 973
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical protein
C38C10.5a protein.
Length = 1368
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 290 PEEYFENCDRECHELDWPMICRVKLVIEVYKTLSKSCGNCTDKDGTGECP 439
PE++ ++ D E+D M + ++ + T+ K+C + D +G CP
Sbjct: 919 PEQFMDSLDERPEEIDPRMAITSQPILMSHDTIIKAC-DFKDTEGRITCP 967
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical protein
C38C10.5b protein.
Length = 1374
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 290 PEEYFENCDRECHELDWPMICRVKLVIEVYKTLSKSCGNCTDKDGTGECP 439
PE++ ++ D E+D M + ++ + T+ K+C + D +G CP
Sbjct: 925 PEQFMDSLDERPEEIDPRMAITSQPILMSHDTIIKAC-DFKDTEGRITCP 973
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical protein
C38C10.5a protein.
Length = 1368
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 290 PEEYFENCDRECHELDWPMICRVKLVIEVYKTLSKSCGNCTDKDGTGECP 439
PE++ ++ D E+D M + ++ + T+ K+C + D +G CP
Sbjct: 919 PEQFMDSLDERPEEIDPRMAITSQPILMSHDTIIKAC-DFKDTEGRITCP 967
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,261,889
Number of Sequences: 27780
Number of extensions: 450218
Number of successful extensions: 1254
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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