Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00232
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 585  WRGQPQKETPFMDGAPML-TQCPQPAYTT 668
            W   P   +PFM GAP + T  P+  + T
Sbjct: 1164 WNPPPFMPSPFMAGAPNVPTILPEQYFAT 1192


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 248 YIPCVLIVV 274
           Y+PCVLIVV
Sbjct: 252 YVPCVLIVV 260


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/66 (15%), Positives = 31/66 (46%)
 Frame = +1

Query: 85  YNVRHSNM*TVTRYMQVKLNIKWSRRKPRWKCTVCQCRNQITCSCPYKGY*CLLLYSMRS 264
           +N+  S++  +   +  +L++ W +   +W   +C+ R  ++ +  Y     ++ +S+  
Sbjct: 73  FNLAVSDLLFLILGLPFELSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLTIVAFSIER 132

Query: 265 NCSALH 282
             +  H
Sbjct: 133 YLAIYH 138


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 278 YTPMPEEYFENCDRECHELDWP 343
           + P+PE YF   D       WP
Sbjct: 264 HEPIPEAYFPKLDSLVASRTWP 285


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 616 LWTEPQC*HNARNLHIPHFNI 678
           LW E       +NLH+P F +
Sbjct: 191 LWKEGDPVQVVKNLHLPRFTL 211


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 616 LWTEPQC*HNARNLHIPHFNI 678
           LW E       +NLH+P F +
Sbjct: 191 LWKEGDPVQVVKNLHLPRFTL 211


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 245 YYIPCVLIVVRY 280
           +YIPC+++V  Y
Sbjct: 352 FYIPCIIMVFLY 363


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 245 YYIPCVLIVV 274
           YYIP +LIVV
Sbjct: 238 YYIPSILIVV 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,785
Number of Sequences: 438
Number of extensions: 5122
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)