Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00232
(766 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g21100.1 68418.m02513 L-ascorbate oxidase, putative similar t... 68 8e-12
At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar t... 58 6e-09
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 58 6e-09
At5g01050.1 68418.m00008 laccase family protein / diphenol oxida... 56 2e-08
At2g30210.1 68415.m03674 laccase, putative / diphenol oxidase, p... 55 5e-08
At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar t... 54 8e-08
At2g46570.1 68415.m05809 laccase family protein / diphenol oxida... 54 8e-08
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p... 54 8e-08
At3g09220.1 68416.m01096 laccase family protein / diphenol oxida... 54 1e-07
At1g18140.1 68414.m02250 laccase family protein / diphenol oxida... 52 6e-07
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p... 49 3e-06
At5g09360.1 68418.m01084 laccase family protein / diphenol oxida... 48 7e-06
At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase, p... 47 2e-05
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida... 47 2e-05
At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase, p... 47 2e-05
At2g38080.1 68415.m04674 laccase, putative / diphenol oxidase, p... 46 4e-05
At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase, p... 44 1e-04
At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase, p... 42 4e-04
At4g12420.1 68417.m01964 multi-copper oxidase, putative (SKU5) i... 38 0.007
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot... 35 0.068
At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase, p... 32 0.48
At1g55560.1 68414.m06359 multi-copper oxidase type I family prot... 31 0.84
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind... 30 1.9
At2g42570.1 68415.m05268 expressed protein 29 3.4
At2g21680.1 68415.m02579 kelch repeat-containing F-box family pr... 29 3.4
At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR... 28 5.9
At2g48130.1 68415.m06025 protease inhibitor/seed storage/lipid t... 28 7.8
>At5g21100.1 68418.m02513 L-ascorbate oxidase, putative similar to
L-ascorbate oxidase [Precursor] SP:Q40588 from
[Nicotiana tabacum]
Length = 573
Score = 67.7 bits (158), Expect = 8e-12
Identities = 29/65 (44%), Positives = 37/65 (56%)
Frame = +3
Query: 528 DILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFRASAVGTH 707
D +++ VV++ + IHW G QK TP+ DGA +TQCP TF YKF GTH
Sbjct: 62 DTVIIHVVNKLSTEGVVIHWHGIRQKGTPWADGAAGVTQCPINPGETFTYKFIVDKAGTH 121
Query: 708 MYHAH 722
YH H
Sbjct: 122 FYHGH 126
>At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar to
L-ascorbate oxidase from {Nicotiana tabacum} SP|Q40588,
{Cucurbita pepo var. melopepo} SP|P37064; contains Pfam
profile PF00394: Multicopper oxidase; supported by cDNA
gi_15215753_gb_AY050406.1_; A false intron was added
between exons 4 and 5 to circumvent the single
nucleotide insertion in this BAC which, otherwise,
causes a frameshift.
Length = 571
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/65 (40%), Positives = 34/65 (52%)
Frame = +3
Query: 528 DILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFRASAVGTH 707
D +VV++ ++ L IHW G Q +P+ DGA +TQC TF Y F GTH
Sbjct: 60 DTIVVNLTNKLTTEGLVIHWHGIRQFGSPWADGAAGVTQCAINPGETFTYNFTVEKPGTH 119
Query: 708 MYHAH 722
YH H
Sbjct: 120 FYHGH 124
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = +3
Query: 510 LHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCP-QPAYTTFQYKFR 686
++V D LVV+V++ + + ++IHW G Q ++ +MDGA M+TQCP QP Y F Y+F
Sbjct: 60 INVREGDTLVVNVINNS-TYNVTIHWHGVFQLKSVWMDGANMITQCPIQPGY-NFTYQFD 117
Query: 687 ASA-VGTHMYHAH 722
+ GT ++HAH
Sbjct: 118 ITGQEGTLLWHAH 130
>At5g01050.1 68418.m00008 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 586
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +3
Query: 510 LHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFRA 689
++V D LVV V++++ + ++IHW G Q ++ +MDGA M+TQCP F Y+F
Sbjct: 60 INVREGDTLVVHVINKS-TYNVTIHWHGVFQLKSVWMDGANMITQCPIQPSNNFTYQFDI 118
Query: 690 SA-VGTHMYHAH 722
+ GT ++HAH
Sbjct: 119 TGQEGTLLWHAH 130
>At2g30210.1 68415.m03674 laccase, putative / diphenol oxidase,
putative similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 570
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 510 LHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFR- 686
L V + D L + V++RA + +SIHW G Q P+ DG +TQCP T+ Y+F+
Sbjct: 60 LVVRNGDSLAITVINRA-RYNISIHWHGIRQLRNPWADGPEYITQCPIRPGQTYTYRFKI 118
Query: 687 ASAVGTHMYHAHS 725
GT +HAHS
Sbjct: 119 EDQEGTLWWHAHS 131
>At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar to
SP|P14133 L-ascorbate oxidase precursor (EC 1.10.3.3)
(Ascorbase) {Cucumis sativus}; contains Pfam profile
PF00394: Multicopper oxidase
Length = 582
Score = 54.4 bits (125), Expect = 8e-08
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +3
Query: 528 DILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFRASAVGTH 707
D +VV++ + +++HW G Q TP+ DG +TQCP F Y+F GT+
Sbjct: 74 DTIVVELKNSFMTENVAVHWHGIRQIGTPWFDGVEGVTQCPILPGEVFIYQFVVDRPGTY 133
Query: 708 MYHAH 722
MYH+H
Sbjct: 134 MYHSH 138
>At2g46570.1 68415.m05809 laccase family protein / diphenol oxidase
family protein similar to laccase [Populus balsamifera
subsp. trichocarpa][GI:3805960]
Length = 569
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 468 SEVFSQQPCFTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQC 647
+E+ + F + +D +V+ V++ P + +IHW G QK + + DG +TQC
Sbjct: 50 NEIVTVNKKFPGPAISAQEDDRIVIKVINMTPYNT-TIHWHGIKQKRSCWYDGPSYITQC 108
Query: 648 PQPAYTTFQYKFR-ASAVGTHMYHAH 722
P + +F Y F+ A GT ++HAH
Sbjct: 109 PIQSGQSFTYNFKVAQQKGTFLWHAH 134
>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
putative similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 580
Score = 54.4 bits (125), Expect = 8e-08
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 495 FTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQ 674
F L V + D LVV V++RA + ++IHW G Q T + DG +TQCP +++
Sbjct: 56 FPGPMLVVNNGDTLVVKVINRA-RYNITIHWHGVRQMRTGWADGPEFVTQCPIRPGSSYT 114
Query: 675 YKFRASA-VGTHMYHAHS 725
Y+F GT +HAHS
Sbjct: 115 YRFTIQGQEGTLWWHAHS 132
>At3g09220.1 68416.m01096 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], laccase GB:CAA74105 [Populus
balsamifera subsp. trichocarpa]; contains Pfam profile:
Multicopper oxidases
Length = 567
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 510 LHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFRA 689
+ V D LV+ V++ +P H ++IHW G K T + DG M+TQCP + Y+F
Sbjct: 58 IRVKEGDSLVIHVLNHSP-HNITIHWHGIFHKLTVWADGPSMITQCPIQPGQRYAYRFNI 116
Query: 690 SA-VGTHMYHAHS 725
+ GT +HAH+
Sbjct: 117 TGQEGTLWWHAHA 129
>At1g18140.1 68414.m02250 laccase family protein / diphenol oxidase
family protein similar to high-pI laccase (LAC2-1)
GI:1621460 from [Liriodendron tulipifera]
Length = 581
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 516 VCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFRA-S 692
V DI+ + V +R AH +IHW G Q T + DG +TQCP + ++ Y+F+
Sbjct: 63 VHEGDIVEIKVTNRI-AHNTTIHWHGLRQYRTGWADGPAYITQCPIRSKQSYTYRFKVED 121
Query: 693 AVGTHMYHAH 722
GT ++HAH
Sbjct: 122 QRGTLLWHAH 131
>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
putative similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 565
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 495 FTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQ 674
F L V + D L V V +RA + ++IHW G Q T + DG +TQCP ++
Sbjct: 54 FPGPTLEVNNGDTLEVKVHNRA-RYNITIHWHGVRQIRTGWADGPEFVTQCPIRPGKSYT 112
Query: 675 YKFRASA-VGTHMYHAHS 725
Y+F GT +HAHS
Sbjct: 113 YRFTIQGQEGTLWWHAHS 130
>At5g09360.1 68418.m01084 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201]
Length = 569
Score = 48.0 bits (109), Expect = 7e-06
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Frame = +3
Query: 384 LLANLVAIVLIKMEQESVRPRVYPQT-DGSEVFSQQPCFTRTKLHVCHNDILVVDVVHRA 560
LLA +A I ++ + Y + + +++ + F L D L+V+V++ A
Sbjct: 25 LLAFQIAEAEIHHHTFKIKSKAYTRLCNTNKILTVNGEFPGPTLKAYRGDKLIVNVINNA 84
Query: 561 PAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFRASA-VGTHMYHAHS 725
+ +++HW G Q P+ DG +TQCP ++ Y+ GT +HAHS
Sbjct: 85 N-YNITLHWHGARQIRNPWSDGPEYVTQCPIRPGESYVYRIDLKVEEGTIWWHAHS 139
>At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase,
putative similar to laccase LAC2-4, Liriodendron
tulipifera, EMBL:LTU73106 [GI:1621467]
Length = 577
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 495 FTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQ 674
F KL D +++ VV++ P + +S+HW G Q + + DG +TQCP ++
Sbjct: 52 FPGPKLIAREGDQVLIKVVNQVPNN-ISLHWHGIRQLRSGWADGPAYITQCPIQTGQSYV 110
Query: 675 YKFR-ASAVGTHMYHAH 722
Y + GT YHAH
Sbjct: 111 YNYTIVGQRGTLWYHAH 127
>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661197]
Length = 565
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 510 LHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFRA 689
+ V D + V+V +RA + +++HW G Q P+ DG +TQCP + F YK
Sbjct: 54 IKVHKGDTIYVNVQNRASEN-ITMHWHGVEQPRNPWSDGPEYITQCPIRPGSDFLYKVIF 112
Query: 690 SAVGTHM-YHAHS 725
S T + +HAHS
Sbjct: 113 SIEDTTVWWHAHS 125
>At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase,
putative similar to diphenol oxidase [Nicotiana
tabacum][GI:1685087]
Length = 553
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 495 FTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQ 674
F ++ +D ++V+VV+ + +SIHW G Q T + DG +TQCP ++
Sbjct: 52 FPGPTIYANEDDTILVNVVNNVK-YNVSIHWHGIRQLRTGWADGPAYITQCPIKPGHSYV 110
Query: 675 YKFRASAV-GTHMYHAH 722
Y F + GT +HAH
Sbjct: 111 YNFTVTGQRGTLWWHAH 127
>At2g38080.1 68415.m04674 laccase, putative / diphenol oxidase,
putative similar to diphenol oxidase [Nicotiana
tabacum][GI:1685087]
Length = 558
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 510 LHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCP-QPAYT-TFQYKF 683
++ +D L++ VV+ + +SIHW G Q T + DG +TQCP QP T+ Y
Sbjct: 59 IYAREDDTLLIKVVNHVK-YNVSIHWHGVRQVRTGWADGPAYITQCPIQPGQVYTYNYTL 117
Query: 684 RASAVGTHMYHAH 722
GT +HAH
Sbjct: 118 TGQR-GTLWWHAH 129
>At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase,
putative similar to laccase [Pinus taeda][GI:13661207]
Length = 557
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 495 FTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQ 674
F ++ D ++++V + + +SIHW G Q + DG +TQCP ++
Sbjct: 53 FPGPTVYAREGDRVIINVTNHVQ-YNMSIHWHGLKQYRNGWADGPAYITQCPIQTGQSYL 111
Query: 675 YKFRASAV-GTHMYHAH 722
Y F + GT +HAH
Sbjct: 112 YDFNVTGQRGTLWWHAH 128
>At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase,
putative similar to laccase [Liriodendron
tulipifera][GI:1621467]
Length = 573
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 528 DILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQYKFRASAV-GT 704
D L + VV+ ++ +SIHW G Q + + DG +TQCP ++ Y F + GT
Sbjct: 68 DNLQIKVVNHV-SNNISIHWHGIRQLRSGWADGPSYVTQCPIRMGQSYVYNFTVTGQRGT 126
Query: 705 HMYHAH 722
+HAH
Sbjct: 127 LWWHAH 132
>At4g12420.1 68417.m01964 multi-copper oxidase, putative (SKU5)
identical to multi-copper oxidase-related protein
(SKU5)(GI:18158154) [Arabidopsis thaliana]; similar to
pollen-specific protein precursor - common tobacco,
PIR2:S22495; contains Pfam profile: PF00394 Multicopper
oxidase
Length = 587
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 495 FTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQ 674
F ++V N+ LVV+V ++ L +HW G Q+ + DG + T CP P +
Sbjct: 52 FPGPTINVTTNENLVVNVRNKLD-EGLLLHWNGIQQRRVSWQDGV-LGTNCPIPPKWNWT 109
Query: 675 YKFRA-SAVGTHMY 713
Y+F+ +G+ Y
Sbjct: 110 YEFQVKDQIGSFFY 123
>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 34.7 bits (76), Expect = 0.068
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 495 FTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQ 674
F L+ N+ +V++V + L + W G ++ + DG T CP PA T F
Sbjct: 54 FPGPNLNSTSNNNVVINVFNNLDEPFL-LTWSGLQHRKNSWQDGVTG-TSCPIPAGTNFT 111
Query: 675 YKFR-ASAVGTHMYH 716
Y F+ +G++ Y+
Sbjct: 112 YHFQPKDQIGSYFYY 126
>At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase,
putative similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 484
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 612 PFMDGAPMLTQCPQPAYTTFQYKF-RASAVGTHMYHAHS 725
P+ DG +TQCP ++ Y+F GT +HAHS
Sbjct: 4 PWADGPEYITQCPIQPGGSYTYRFTMEDQEGTLWWHAHS 42
>At1g55560.1 68414.m06359 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 549
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 495 FTRTKLHVCHNDILVVDVVHRAPAHALSIHWRGQPQKETPFMDGAPMLTQCPQPAYTTFQ 674
F L+ N+ +V++V + L + W G ++ + DG T CP PA F
Sbjct: 53 FPGPNLNSTSNNNVVINVFNHLDEPFL-LTWSGIQHRKNCWQDGVAG-TSCPIPAGQNFT 110
Query: 675 YKFR-ASAVGTHMYH 716
Y F+ +G++ Y+
Sbjct: 111 YHFQPKDQIGSYFYY 125
>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
cassette transporter ABC1, Homo sapiens, PIR2:A54774
Length = 947
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 371 EVYKTLSKSCG-NCTDKDGTGECPSTC-ISADGRERGVLTA 487
+V +L CG C DK G G+C TC + R++G A
Sbjct: 55 QVNNSLDNQCGCQCIDKLGDGKCQMTCGLEYSTRDQGFFCA 95
>At2g42570.1 68415.m05268 expressed protein
Length = 367
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 656 CIYHISI*IPSICSWNTYVPRSLRSGRC*WSRRRPWV 766
C+ +S I S S N V R L SGRC W R WV
Sbjct: 20 CLSTVSAYINSTSSNNDEVRRELASGRCNWFRGN-WV 55
>At2g21680.1 68415.m02579 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 414
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 549 LHRLRGYRCDKHEAWC 502
+HRLR Y C K E WC
Sbjct: 359 VHRLRRYDCRKREIWC 374
>At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1041
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 749 ETISSVRCGVSVVHMCSNCRCSEFILKCG 663
E I +RCGV ++HM +F L CG
Sbjct: 951 EKIEKMRCGVQLLHMTLGNSEEDFNLPCG 979
>At2g48130.1 68415.m06025 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 183
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 622 TEPQC*HNARNLHIPHFNIN---SEHLQLEHICTTLTPQRTLLMVSQAP 759
+ PQC +A N IP+ +N ++ LQL + C TP T + P
Sbjct: 65 SSPQCICSAVNSPIPNIGLNINRTQALQLPNACNIQTPPLTQCNAATGP 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,808,484
Number of Sequences: 28952
Number of extensions: 397442
Number of successful extensions: 959
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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