Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00231
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.86 
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    23   2.6  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    23   2.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   3.5  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    22   6.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 499  AQVEKPMEENGVLTGYKIYYSKV 567
            A  + P+E NG++  Y +YY  V
Sbjct: 1219 ASWKPPVEPNGIVEYYTVYYKPV 1241



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
 Frame = +3

Query: 369  VRILAYNGRFNGPASDTLSFVTPEGQP------STVRSFEAYPIGSSACCSSGEAHGGER 530
            V + A+N    GP SD +   T EG P      +T  +  A  I  S       A  G  
Sbjct: 1074 VVVQAFNKVGAGPLSDDIKAYTAEGVPEQPPDKATCTTLTAQTIRVSWVSPPLTAANGVI 1133

Query: 531  RPHRLQDLLQQGDRHGRGDSEDRKKEIDPKFDRAK---LAGLEPNTKYRIEIRAKTKAGE 701
            + +++         +G  D+   +   D K   A    L GL+  T Y +E+ A T  G+
Sbjct: 1134 KGYKVI--------YGPSDTWFDENTKDTKITAASETILHGLKKYTNYSMEVLAYTSGGD 1185

Query: 702  G 704
            G
Sbjct: 1186 G 1186



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 645  LEPNTKYRIEIRAKTKAGEGK 707
            L+ N KY   + A T  GEG+
Sbjct: 1272 LDSNLKYEFWVTAATTIGEGQ 1292



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 526  NGVLTGYKIYY 558
            NGV+ GYK+ Y
Sbjct: 1130 NGVIKGYKVIY 1140


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 510 EAHGGERRPHRLQDLLQQGDRHGRGDSEDRKKEID 614
           E + G+RR   L  LL   ++ G  D E  ++E+D
Sbjct: 273 EVYTGKRRLAMLDLLLTAKNKEGLIDDEGIREEVD 307


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 510 EAHGGERRPHRLQDLLQQGDRHGRGDSEDRKKEID 614
           E + G+RR   L  LL   ++ G  D E  ++E+D
Sbjct: 273 EVYTGKRRLAMLDLLLTAKNKEGLIDDEGIREEVD 307


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 240 GALQRYKIQTWTDAEEDRLKEI 305
           G L R+K  +W D   +RL +I
Sbjct: 388 GQLARFKCLSWLDLSYNRLGQI 409


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 490 EEPIG*ASKERTVEGCPSGVTKLRVSLAGPLKR 392
           E+P+    K  T+ GC +  T +R   + P ++
Sbjct: 233 EQPLAQTKKLATIVGCGTDETMIRCLKSRPARQ 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.312    0.128    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,298
Number of Sequences: 336
Number of extensions: 2297
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)