Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00231
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    27   2.2  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    27   3.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.8  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   3.8  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   5.0  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   8.8  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   8.8  

>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 1   VRDWQQTEHLVTNTPTFQPYKIKVTAVNFKGTSNVTP---IEVIGW 129
           ++ WQ   HL    P F+ +K    AV +    +++    IE +GW
Sbjct: 189 IKHWQDVRHLAFKIPNFERWKPGDVAVLYPWNDDMSVNSFIECMGW 234


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 399 NGPASDTLSFVTPEGQPSTVRSFEAYPIGSSACCSS 506
           +GP    LSF TP+G PS   ++  Y    S    S
Sbjct: 157 SGPGKLELSF-TPKGNPSAKETYNVYEFNGSGVAMS 191


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 469 SKERTVEGCPSGVTKLRVSLAGPLKRP 389
           +K RTV+GC +G ++  V  A P+  P
Sbjct: 44  AKRRTVKGCKNGTSEPNVFKARPIPPP 70


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 130 SGEDRPTQAPGNLSLSQVTSGTSAVLSW--TPVAP 228
           S    PT AP     S+VTSGT  +LS   TP +P
Sbjct: 369 SPNPNPTLAPNPTGPSRVTSGTEDLLSLDATPFSP 403


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 588 SLHGRGDHLAVVDLVAGEDAVLLHGL 511
           S H RGD+LA     +   AVL+H L
Sbjct: 531 SWHRRGDYLATSSPTSSSQAVLIHQL 556


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 474 YPIGSSACCS-SGEAHGGERRPHRLQDLLQQG 566
           + I   AC + S    GG RRP +++ L++QG
Sbjct: 388 FKIQKEACWAISNATSGGARRPDQIRYLVEQG 419


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 573 HGRGDSEDRKKEIDPKFDRAKLAGLEPNTKYRIEIRAKTKAGE 701
           HG+G S  R K +D +      +  EP+T    +    T +GE
Sbjct: 90  HGKGKSSKRPKAVDRRRSITAPSKTEPSTPSTEKPEPSTPSGE 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.128    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,201
Number of Sequences: 5004
Number of extensions: 36504
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)