Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00231
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 32 0.43
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 32 0.57
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 31 0.99
11_01_0619 - 4961588-4962409 29 5.3
09_06_0376 - 22694914-22696071,22696111-22696416 29 5.3
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 29 5.3
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 29 5.3
05_05_0299 - 23930657-23932627 28 7.0
04_04_0410 - 25010455-25011819 28 7.0
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 28 7.0
06_03_0941 + 26179682-26182327 28 9.2
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 28 9.2
03_05_0851 + 28225608-28226570 28 9.2
03_05_0671 + 26608953-26609671,26609775-26610495 28 9.2
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 32.3 bits (70), Expect = 0.43
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 426 FVTPEGQP----STVRSFEAYPIGSSACCSSGEAHGGERRPHRLQD 551
FV +G P TVR+ EA G+ A +G HG RP L+D
Sbjct: 245 FVCGDGDPLCGVETVRALEARARGARAAVYAGRGHGFAHRPQSLED 290
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 129 VRRGPTHSGSGQPQPVPGDVRHQRRAQLDSRGAGVTAGALQRYKIQT 269
++R P +SGS Q VP V R LD R + + ++R++I+T
Sbjct: 146 LKRSPEYSGSDQFSYVPRRVDGYMRKPLDLRAQKMPSSPIERFQIET 192
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 510 EAHGGERRPHRLQDLLQQGDRHGRGDSEDRKKEIDPKFDRAKLAGLEPNTKYR 668
+ + GERR +R D + DRH R +S++RK+ D R + G +K+R
Sbjct: 502 DKYEGERR-YREDDGHGRSDRHKRDESDNRKRSPDTGKHRREDGGHRETSKHR 553
>11_01_0619 - 4961588-4962409
Length = 273
Score = 28.7 bits (61), Expect = 5.3
Identities = 25/77 (32%), Positives = 33/77 (42%)
Frame = +3
Query: 384 YNGRFNGPASDTLSFVTPEGQPSTVRSFEAYPIGSSACCSSGEAHGGERRPHRLQDLLQQ 563
Y R + +S+ F S+V E Y GSS+ SS ++ +RRP R QQ
Sbjct: 177 YRSRSDSDSSEASVF--DSDSESSVTGSE-YSSGSSSSYSSSDSEDKKRRPKR----KQQ 229
Query: 564 GDRHGRGDSEDRKKEID 614
RH R S E D
Sbjct: 230 KRRHRRETSSSASSESD 246
>09_06_0376 - 22694914-22696071,22696111-22696416
Length = 487
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 138 GPTHSGSGQPQPVPGDV 188
GPT SG Q QP PGD+
Sbjct: 42 GPTPSGDAQDQPGPGDI 58
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 138 GPTHSGSGQPQPVPGDV 188
GPT SG Q QP PGD+
Sbjct: 507 GPTPSGDAQDQPGPGDI 523
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +3
Query: 438 EGQPSTVRSFEAYPIGSSACCSSGEAHGGERRPHRLQDLLQQGDRHGRGDSEDRKKEIDP 617
E Q S R + P + + + R ++G HG+G+S+ +K+
Sbjct: 408 ETQESKSRGGSSEPKDRKSSSEHKDRRSSSEQKDRRSPSERKGSNHGKGESKSKKRSSTS 467
Query: 618 K-FDRAKLAGLEPNTKYRIEIRAKTKAGEGKGYYV 719
K + EP+ K ++ K K G+GK + +
Sbjct: 468 KDASSPDRSSAEPSEK---QLYDKHKQGKGKFHMI 499
>05_05_0299 - 23930657-23932627
Length = 656
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 459 RSFEAYPIGSSACCSSGEAHGGERRPHRLQDLLQQGDRHGRGDSEDRKKEID 614
+ EA+ A +G+ GGE Q + GD + D ++ KKE +
Sbjct: 187 KGLEAFLAAEKAALGNGDGDGGEDDDDLFQVKPKGGDGGNKEDDDEEKKETE 238
>04_04_0410 - 25010455-25011819
Length = 454
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 132 RRGPTHSGSGQPQPVPGDVRHQRRAQLDSRGAGVTAGAL 248
R G G V GD+RH+ R D + TAGAL
Sbjct: 192 RLGKCDGGMAAFSAVSGDLRHRFRVAHDRQAKSFTAGAL 230
>01_01_0484 -
3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 6 GLAANRTPGDQHPHLPALQDQGDG--GELQRNIER 104
G AA+R P HP + AL DG ELQR R
Sbjct: 133 GSAASRFPPHDHPFVQALASGADGARAELQRQAAR 167
>06_03_0941 + 26179682-26182327
Length = 881
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 243 PPQ*LRRHGSPAEHGAGAGRHLGQAEVARSLSGSVLSGPAD 121
PP L+ + P HGA AG G A + S SG + GP D
Sbjct: 310 PPDSLQPYYLPLGHGAPAGTAFGFATLNVSASGGCV-GPLD 349
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +3
Query: 84 LQRNIERDSH*SDRLVRRGPTHSGSGQ----PQPVPGDVRHQRRAQLDSRG 224
+QR +ERD + S + +R+ Q PQ V GD R Q Q S G
Sbjct: 323 VQRAVERDEYVSTKHIRKQLLARAKSQIRAMPQQVNGDAREQTSGQEKSLG 373
>03_05_0851 + 28225608-28226570
Length = 320
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 228 RRHGSPAEHGAGAGRHLGQA 169
++H +PA+ G GAG H G A
Sbjct: 129 QQHSNPADRGGGAGDHKGAA 148
>03_05_0671 + 26608953-26609671,26609775-26610495
Length = 479
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 183 HLGQAEVARSLSGSVLSGPADHFNGSHVRCSFEVH 79
++ + E A +++ LS P DHFNG + + + VH
Sbjct: 198 YVREGEAAGTVADMALSFPYDHFNGVYWQGALYVH 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.128 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,345,781
Number of Sequences: 37544
Number of extensions: 340633
Number of successful extensions: 1111
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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